Mercurial > repos > iuc > hmmer_phmmer

diff phmmer.xml @ 8:92ff5dcded40 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
author iuc
date Mon, 06 Nov 2023 20:24:54 +0000
parents 8a791afd99fb
children 37bcc9fb0bb1
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--- a/phmmer.xml	Wed Jul 21 14:16:08 2021 +0000
+++ b/phmmer.xml	Mon Nov 06 20:24:54 2023 +0000
@@ -1,9 +1,10 @@
 <?xml version="1.0"?>
-<tool id="hmmer_phmmer" name="phmmer" version="@TOOL_VERSION@+galaxy0">
+<tool id="hmmer_phmmer" name="phmmer" version="@TOOL_VERSION@+galaxy1">
   <description>search a protein sequence against a protein database (BLASTP-like)</description>
   <macros>
     <import>macros.xml</import>
   </macros>
+  <expand macro="bio_tools"/>
   <expand macro="requirements"/>
   <expand macro="stdio"/>
   <command><![CDATA[
@@ -13,6 +14,7 @@
 @OFORMAT_WITH_OPTS@
 @HSSI@
 @THRESHOLDS@
+@THRESHOLDS_DOM@
 @ACCEL_HEUR@
 @EVAL_CALIB@
 @ADV_OPTS@
@@ -30,7 +32,7 @@
     <param name="seqdb" type="data" format="fasta" label="Sequence Database"/>
     <expand macro="oformat_with_opts_dom_pfam"/>
     <expand macro="hssi"/>
-    <expand macro="thresholds_xml"/>
+    <expand macro="thresholds_dom_xml"/>
     <expand macro="accel_heur_xml"/>
     <expand macro="eval_calib_xml"/>
     <expand macro="adv_opts"/>