Mercurial > repos > iuc > homer_annotatepeaks

annotate test-data/motif_test1/homerResults/motif5.info.html @ 0:adab852c8216 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:03:29 +0000
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1 <HTML><HEAD><TITLE>Motif 5</TITLE></HEAD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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2 <H2>Information for 2-ATCAAGATGA (Motif 5)</H2>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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3 <svg width="255" height="50">
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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4 <g font-family="Arial" font-weight="bold" font-size="66.5">
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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89 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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91 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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92 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,44)">C</text>
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93 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,39)">G</text>
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94 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,151,34)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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96 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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97 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,44)">C</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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98 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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99 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,175,34)">G</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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101 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,49)">C</text>
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102 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,200,44)">G</text>
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103 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
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104 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,202,34)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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106 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
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107 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
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108 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,39)">G</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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109 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,226,34)">T</text>
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111 </g>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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112 </svg>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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113 <BR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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114 <TABLE border="1" cellpading="0" cellspacing="0">
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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115 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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116 <TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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117 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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118 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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119 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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120 <TR><TD>Number of Background Sequences with motif</TD><TD>219.8</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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121 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.48%</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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122 <TR><TD>Average Position of motif in Targets</TD><TD>113.0 +/- 0.0bp</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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123 <TR><TD>Average Position of motif in Background</TD><TD>94.6 +/- 75.6bp</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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124 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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125 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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126 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif5.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif5RV.motif">reverse opposite</A></TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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127 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif5.logo.svg">forward logo</A><BR/><A HREF="motif5RV.logo.svg">reverse opposite</A></TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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128 </TABLE>
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129 <H3>Matches to Known Motifs</H3>
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130 <TABLE border="1" cellpading="0" cellspacing="0">
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131 <TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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132 <H4>SNRNP70K(RRM)/Drosophila_melanogaster-RNCMPT00143-PBM/HughesRNA</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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133 <TABLE><TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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134 <TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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135 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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136 <TR><TD>Score:</TD><TD>0.79</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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137 <TR><TD>Offset:</TD><TD>-1</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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138 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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139 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA</FONT><BR><FONT face="courier">GATCAAGA---</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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140 </TD><TD>
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141 <svg width="280" height="50">
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142 <g font-family="Arial" font-weight="bold" font-size="66.5">
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143 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.25,2,49)">A</text>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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144 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.25,0,36.5)">C</text>
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145 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.25,0,24)">G</text>
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146 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.25,1,11.5)">T</text>
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148 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,49)">C</text>
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149 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text>
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259 </g>
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260 </svg>
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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262 </TD></TR></TABLE>
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263 </TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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264 <TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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265 <H4>MATR3(RRM)/Homo_sapiens-RNCMPT00037-PBM/HughesRNA</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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266 <TABLE><TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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267 <TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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268 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
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269 <TR><TD>Score:</TD><TD>0.77</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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270 <TR><TD>Offset:</TD><TD>2</TD</TR>
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271 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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272 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA</FONT><BR><FONT face="courier">--CAAGATT-</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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273 </TD><TD>
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274 <svg width="255" height="50">
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385 </TD></TR></TABLE>
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386 </TD></TR>
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387 <TR><TD>
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iuc
parents:
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388 <H4>SNRNP70(RRM)/Homo_sapiens-RNCMPT00070-PBM/HughesRNA</H4>
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389 <TABLE><TR><TD>
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390 <TABLE>
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iuc
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391 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
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392 <TR><TD>Score:</TD><TD>0.74</TD</TR>
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393 <TR><TD>Offset:</TD><TD>-1</TD</TR>
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iuc
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394 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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395 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA</FONT><BR><FONT face="courier">GATCAAG----</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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396 </TD><TD>
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397 <svg width="280" height="50">
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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524 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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525 <TR><TD>Score:</TD><TD>0.68</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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526 <TR><TD>Offset:</TD><TD>-1</TD</TR>
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iuc
parents:
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527 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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528 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA----</FONT><BR><FONT face="courier">GATNAAGATAAGGTT</FONT></TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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529 </TD><TD>
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530 <svg width="380" height="50">
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691 </TD></TR></TABLE>
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692 </TD></TR>
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693 <TR><TD>
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iuc
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diff changeset
694 <H4>RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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695 <TABLE><TR><TD>
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696 <TABLE>
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diff changeset
697 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
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diff changeset
698 <TR><TD>Score:</TD><TD>0.68</TD</TR>
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699 <TR><TD>Offset:</TD><TD>5</TD</TR>
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700 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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701 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA--</FONT><BR><FONT face="courier">-----GATGATN</FONT></TD></TR></TABLE>
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702 </TD><TD>
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833
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834 </TD></TR></TABLE>
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835 </TD></TR>
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837 <H4>Rbm47(RRM)/Xenopus_tropicalis-RNCMPT00280-PBM/HughesRNA</H4>
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838 <TABLE><TR><TD>
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839 <TABLE>
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diff changeset
840 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
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841 <TR><TD>Score:</TD><TD>0.67</TD</TR>
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842 <TR><TD>Offset:</TD><TD>5</TD</TR>
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843 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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844 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA--</FONT><BR><FONT face="courier">-----GATGATN</FONT></TD></TR></TABLE>
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977 </TD></TR></TABLE>
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978 </TD></TR>
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diff changeset
980 <H4>RIN(RRM)/Drosophila_melanogaster-RNCMPT00138-PBM/HughesRNA</H4>
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981 <TABLE><TR><TD>
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982 <TABLE>
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983 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
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984 <TR><TD>Score:</TD><TD>0.65</TD</TR>
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985 <TR><TD>Offset:</TD><TD>4</TD</TR>
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986 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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987 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA--</FONT><BR><FONT face="courier">----AGATGATG</FONT></TD></TR></TABLE>
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988 </TD><TD>
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1120 </TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1121 </TD></TR>
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1122 <TR><TD>
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iuc
parents:
diff changeset
1123 <H4>ZBTB18/MA0698.1/Jaspar</H4>
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1124 <TABLE><TR><TD>
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iuc
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diff changeset
1125 <TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1126 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1127 <TR><TD>Score:</TD><TD>0.64</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1128 <TR><TD>Offset:</TD><TD>-1</TD</TR>
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iuc
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diff changeset
1129 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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iuc
parents:
diff changeset
1130 <TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA--</FONT><BR><FONT face="courier">CATCCAGATGTTC</FONT></TD></TR></TABLE>
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iuc
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1131 </TD><TD>
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1132 <svg width="330" height="50">
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1273 </TD></TR></TABLE>
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1274 </TD></TR>
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1276 <H4>At3g11280/MA1188.1/Jaspar</H4>
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1277 <TABLE><TR><TD>
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iuc
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1278 <TABLE>
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iuc
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diff changeset
1279 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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diff changeset
1280 <TR><TD>Score:</TD><TD>0.64</TD</TR>
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1281 <TR><TD>Offset:</TD><TD>0</TD</TR>
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1282 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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1283 <TR><TD>Alignment:</TD><TD><FONT face="courier">ATCAAGATGA----</FONT><BR><FONT face="courier">ATNAAGATAAGGAT</FONT></TD></TR></TABLE>
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1284 </TD><TD>
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1434 </svg>
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1436 </TD></TR></TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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1437 </TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1438 <TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1439 <H4>onecut/dmmpmm(Noyes_hd)/fly</H4>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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1440 <TABLE><TR><TD>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1441 <TABLE>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1442 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1443 <TR><TD>Score:</TD><TD>0.63</TD</TR>
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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diff changeset
1444 <TR><TD>Offset:</TD><TD>-3</TD</TR>
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iuc
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diff changeset
1445 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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iuc
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diff changeset
1446 <TR><TD>Alignment:</TD><TD><FONT face="courier">---ATCAAGATGA</FONT><BR><FONT face="courier">CAAATCAANN---</FONT></TD></TR></TABLE>
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1447 </TD><TD>
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1448 <svg width="330" height="50">
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