Mercurial > repos > iuc > homer_annotatepeaks

annotate test-data/small.gtf @ 3:fa7c3a74acf2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
author iuc
date Thu, 06 Apr 2023 16:24:36 +0000
parents adab852c8216
children
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adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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1 #!genome-build GRCm38.p6
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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2 #!genome-version GRCm38
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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3 #!genome-date 2012-01
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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4 #!genome-build-accession NCBI:GCA_000001635.8
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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5 #!genebuild-last-updated 2020-02
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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6 chr2 ensembl_havana gene 74668310 74671599 . + . gene_id "ENSMUSG00000001819"; gene_version "4"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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7 chr2 ensembl_havana transcript 74668310 74671599 . + . gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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8 chr2 ensembl_havana exon 74668310 74669078 . + . gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "1"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; exon_id "ENSMUSE00000336629"; exon_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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9 chr2 ensembl_havana CDS 74668310 74669078 . + 0 gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "1"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; protein_id "ENSMUSP00000001872"; protein_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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10 chr2 ensembl_havana start_codon 74668310 74668312 . + 0 gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "1"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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11 chr2 ensembl_havana exon 74669886 74671599 . + . gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "2"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; exon_id "ENSMUSE00000601614"; exon_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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12 chr2 ensembl_havana CDS 74669886 74670133 . + 2 gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "2"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; protein_id "ENSMUSP00000001872"; protein_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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13 chr2 ensembl_havana stop_codon 74670134 74670136 . + 0 gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; exon_number "2"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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14 chr2 ensembl_havana three_prime_utr 74670137 74671599 . + . gene_id "ENSMUSG00000001819"; gene_version "4"; transcript_id "ENSMUST00000001872"; transcript_version "4"; gene_name "Hoxd13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000013304"; havana_gene_version "2"; transcript_name "Hoxd13-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16139"; havana_transcript "OTTMUST00000032142"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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15 chr2 ensembl_havana gene 74675013 74677705 . + . gene_id "ENSMUSG00000001823"; gene_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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16 chr2 ensembl_havana transcript 74675013 74677705 . + . gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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17 chr2 ensembl_havana exon 74675013 74675654 . + . gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "1"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; exon_id "ENSMUSE00000166083"; exon_version "5"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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18 chr2 ensembl_havana CDS 74675087 74675654 . + 0 gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "1"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; protein_id "ENSMUSP00000001878"; protein_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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19 chr2 ensembl_havana start_codon 74675087 74675089 . + 0 gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "1"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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20 chr2 ensembl_havana exon 74675814 74677705 . + . gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "2"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; exon_id "ENSMUSE00000359408"; exon_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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21 chr2 ensembl_havana CDS 74675814 74676049 . + 2 gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "2"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; protein_id "ENSMUSP00000001878"; protein_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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22 chr2 ensembl_havana stop_codon 74676050 74676052 . + 0 gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; exon_number "2"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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23 chr2 ensembl_havana five_prime_utr 74675013 74675086 . + . gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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24 chr2 ensembl_havana three_prime_utr 74676053 74677705 . + . gene_id "ENSMUSG00000001823"; gene_version "5"; transcript_id "ENSMUST00000001878"; transcript_version "5"; gene_name "Hoxd12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016555"; havana_gene_version "3"; transcript_name "Hoxd12-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38147"; havana_transcript "OTTMUST00000040008"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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25 chr2 ensembl_havana gene 74679557 74687016 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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26 chr2 havana transcript 74679557 74687016 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000048086"; transcript_version "8"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040002"; havana_transcript_version "5"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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27 chr2 havana exon 74679557 74679809 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000048086"; transcript_version "8"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040002"; havana_transcript_version "5"; exon_id "ENSMUSE00000843165"; exon_version "3"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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28 chr2 havana exon 74683903 74687016 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000048086"; transcript_version "8"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040002"; havana_transcript_version "5"; exon_id "ENSMUSE00000330347"; exon_version "4"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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29 chr2 ensembl_havana transcript 74682323 74684168 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
30 chr2 ensembl_havana exon 74682323 74683167 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; exon_id "ENSMUSE00000404559"; exon_version "8"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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31 chr2 ensembl_havana CDS 74682393 74683167 . + 0 gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; protein_id "ENSMUSP00000122582"; protein_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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32 chr2 ensembl_havana start_codon 74682393 74682395 . + 0 gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "1"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
33 chr2 ensembl_havana exon 74683903 74684168 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; exon_id "ENSMUSE00000746167"; exon_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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parents:
diff changeset
34 chr2 ensembl_havana CDS 74683903 74684135 . + 2 gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; protein_id "ENSMUSP00000122582"; protein_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
35 chr2 ensembl_havana stop_codon 74684136 74684138 . + 0 gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; exon_number "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
36 chr2 ensembl_havana five_prime_utr 74682323 74682392 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
37 chr2 ensembl_havana three_prime_utr 74684139 74684168 . + . gene_id "ENSMUSG00000042499"; gene_version "13"; transcript_id "ENSMUST00000142312"; transcript_version "2"; gene_name "Hoxd11"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016551"; havana_gene_version "6"; transcript_name "Hoxd11-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16140"; havana_transcript "OTTMUST00000040001"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
38 chr2 havana gene 74683446 74694194 . + . gene_id "ENSMUSG00000099521"; gene_version "1"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
39 chr2 havana transcript 74683446 74694194 . + . gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
40 chr2 havana exon 74683446 74683509 . + . gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; exon_number "1"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; exon_id "ENSMUSE00000731883"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
41 chr2 havana exon 74683903 74684357 . + . gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; exon_number "2"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; exon_id "ENSMUSE00000774488"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
42 chr2 havana exon 74694091 74694194 . + . gene_id "ENSMUSG00000099521"; gene_version "1"; transcript_id "ENSMUST00000136302"; transcript_version "2"; exon_number "3"; gene_name "Gm28309"; gene_source "havana"; gene_biotype "processed_transcript"; havana_gene "OTTMUSG00000049460"; havana_gene_version "1"; transcript_name "Gm28309-201"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000126087"; havana_transcript_version "1"; exon_id "ENSMUSE00000858519"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
43 chr2 ensembl_havana gene 74691924 74695105 . + . gene_id "ENSMUSG00000050368"; gene_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
44 chr2 ensembl_havana transcript 74691924 74695105 . + . gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
45 chr2 ensembl_havana exon 74691924 74692724 . + . gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "1"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; exon_id "ENSMUSE00000341264"; exon_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
46 chr2 ensembl_havana CDS 74691980 74692724 . + 0 gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "1"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; protein_id "ENSMUSP00000062412"; protein_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
47 chr2 ensembl_havana start_codon 74691980 74691982 . + 0 gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "1"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
48 chr2 ensembl_havana exon 74694091 74695105 . + . gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "2"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; exon_id "ENSMUSE00000343683"; exon_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
49 chr2 ensembl_havana CDS 74694091 74694365 . + 2 gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "2"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; protein_id "ENSMUSP00000062412"; protein_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
50 chr2 ensembl_havana stop_codon 74694366 74694368 . + 0 gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; exon_number "2"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
51 chr2 ensembl_havana five_prime_utr 74691924 74691979 . + . gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
52 chr2 ensembl_havana three_prime_utr 74694369 74695105 . + . gene_id "ENSMUSG00000050368"; gene_version "4"; transcript_id "ENSMUST00000061745"; transcript_version "4"; gene_name "Hoxd10"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016554"; havana_gene_version "3"; transcript_name "Hoxd10-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16141"; havana_transcript "OTTMUST00000040007"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
53 chr2 havana gene 74695520 74697365 . + . gene_id "ENSMUSG00000086077"; gene_version "7"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
54 chr2 havana transcript 74695520 74697365 . + . gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000126966"; transcript_version "7"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-201"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040005"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
55 chr2 havana exon 74695520 74695732 . + . gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000126966"; transcript_version "7"; exon_number "1"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-201"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040005"; havana_transcript_version "3"; exon_id "ENSMUSE00000756210"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
56 chr2 havana exon 74697031 74697365 . + . gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000126966"; transcript_version "7"; exon_number "2"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-201"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040005"; havana_transcript_version "3"; exon_id "ENSMUSE00000777033"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
57 chr2 havana transcript 74695601 74697365 . + . gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000152027"; transcript_version "2"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-202"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040006"; havana_transcript_version "3"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
58 chr2 havana exon 74695601 74695727 . + . gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000152027"; transcript_version "2"; exon_number "1"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-202"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040006"; havana_transcript_version "3"; exon_id "ENSMUSE00000772112"; exon_version "1"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
59 chr2 havana exon 74697031 74697365 . + . gene_id "ENSMUSG00000086077"; gene_version "7"; transcript_id "ENSMUST00000152027"; transcript_version "2"; exon_number "2"; gene_name "Gm14396"; gene_source "havana"; gene_biotype "lincRNA"; havana_gene "OTTMUSG00000037522"; havana_gene_version "2"; transcript_name "Gm14396-202"; transcript_source "havana"; transcript_biotype "lincRNA"; havana_transcript "OTTMUST00000040006"; havana_transcript_version "3"; exon_id "ENSMUSE00000777033"; exon_version "1"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
60 chr2 havana gene 74696768 74697586 . - . gene_id "ENSMUSG00000100209"; gene_version "1"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
61 chr2 havana transcript 74696768 74697586 . - . gene_id "ENSMUSG00000100209"; gene_version "1"; transcript_id "ENSMUST00000190845"; transcript_version "1"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1"; transcript_name "Gm28793-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000119840"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
62 chr2 havana exon 74697248 74697586 . - . gene_id "ENSMUSG00000100209"; gene_version "1"; transcript_id "ENSMUST00000190845"; transcript_version "1"; exon_number "1"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1"; transcript_name "Gm28793-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000119840"; havana_transcript_version "1"; exon_id "ENSMUSE00001327914"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
63 chr2 havana exon 74696768 74696841 . - . gene_id "ENSMUSG00000100209"; gene_version "1"; transcript_id "ENSMUST00000190845"; transcript_version "1"; exon_number "2"; gene_name "Gm28793"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000045856"; havana_gene_version "1"; transcript_name "Gm28793-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000119840"; havana_transcript_version "1"; exon_id "ENSMUSE00001329539"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
64 chr2 ensembl_havana gene 74697727 74700208 . + . gene_id "ENSMUSG00000043342"; gene_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
65 chr2 ensembl_havana transcript 74697727 74700208 . + . gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
66 chr2 ensembl_havana exon 74697727 74698833 . + . gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "1"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; exon_id "ENSMUSE00000385196"; exon_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
67 chr2 ensembl_havana CDS 74698056 74698833 . + 0 gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "1"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; protein_id "ENSMUSP00000058490"; protein_version "8"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
68 chr2 ensembl_havana start_codon 74698056 74698058 . + 0 gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "1"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
69 chr2 ensembl_havana exon 74699180 74700208 . + . gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "2"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; exon_id "ENSMUSE00000351804"; exon_version "8"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
70 chr2 ensembl_havana CDS 74699180 74699418 . + 2 gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "2"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; protein_id "ENSMUSP00000058490"; protein_version "8"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
71 chr2 ensembl_havana stop_codon 74699419 74699421 . + 0 gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; exon_number "2"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
72 chr2 ensembl_havana five_prime_utr 74697727 74698055 . + . gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
73 chr2 ensembl_havana three_prime_utr 74699422 74700208 . + . gene_id "ENSMUSG00000043342"; gene_version "9"; transcript_id "ENSMUST00000059272"; transcript_version "9"; gene_name "Hoxd9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016552"; havana_gene_version "4"; transcript_name "Hoxd9-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16142"; havana_transcript "OTTMUST00000040004"; havana_transcript_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
74 chr2 ensembl gene 74701006 74701142 . - . gene_id "ENSMUSG00000104570"; gene_version "1"; gene_name "Gm44463"; gene_source "ensembl"; gene_biotype "miRNA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
75 chr2 ensembl transcript 74701006 74701142 . - . gene_id "ENSMUSG00000104570"; gene_version "1"; transcript_id "ENSMUST00000198895"; transcript_version "1"; gene_name "Gm44463"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "Gm44463-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; tag "basic"; transcript_support_level "NA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
76 chr2 ensembl exon 74701006 74701142 . - . gene_id "ENSMUSG00000104570"; gene_version "1"; transcript_id "ENSMUST00000198895"; transcript_version "1"; exon_number "1"; gene_name "Gm44463"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "Gm44463-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; exon_id "ENSMUSE00001352249"; exon_version "1"; tag "basic"; transcript_support_level "NA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
77 chr2 ensembl_havana gene 74703248 74716130 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
78 chr2 havana transcript 74703248 74712054 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000132326"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040117"; havana_transcript_version "1"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
79 chr2 havana exon 74711970 74712054 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000132326"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040117"; havana_transcript_version "1"; exon_id "ENSMUSE00000793320"; exon_version "1"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
80 chr2 havana exon 74703248 74703622 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000132326"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-201"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040117"; havana_transcript_version "1"; exon_id "ENSMUSE00000821641"; exon_version "1"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
81 chr2 ensembl_havana transcript 74710043 74712526 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000156342"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-204"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040116"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
82 chr2 ensembl_havana exon 74711970 74712526 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000156342"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-204"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040116"; havana_transcript_version "1"; exon_id "ENSMUSE00000842711"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
83 chr2 ensembl_havana exon 74710043 74710281 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000156342"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-204"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040116"; havana_transcript_version "1"; exon_id "ENSMUSE00000734798"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
84 chr2 havana transcript 74710193 74715996 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
85 chr2 havana exon 74715706 74715996 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; exon_id "ENSMUSE00000743618"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
86 chr2 havana exon 74714271 74714401 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; exon_id "ENSMUSE00000733703"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
87 chr2 havana exon 74710193 74710281 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000145799"; transcript_version "1"; exon_number "3"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-203"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040114"; havana_transcript_version "1"; exon_id "ENSMUSE00000841303"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
88 chr2 ensembl_havana transcript 74713126 74716130 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000139005"; transcript_version "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-202"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040115"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
89 chr2 ensembl_havana exon 74715706 74716130 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000139005"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-202"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040115"; havana_transcript_version "1"; exon_id "ENSMUSE00000734469"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
90 chr2 ensembl_havana exon 74713126 74714401 . - . gene_id "ENSMUSG00000052371"; gene_version "5"; transcript_id "ENSMUST00000139005"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3os1"; gene_source "ensembl_havana"; gene_biotype "antisense"; havana_gene "OTTMUSG00000016596"; havana_gene_version "1"; transcript_name "Hoxd3os1-202"; transcript_source "ensembl_havana"; transcript_biotype "antisense"; havana_transcript "OTTMUST00000040115"; havana_transcript_version "1"; exon_id "ENSMUSE00000862774"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
91 chr2 ensembl_havana gene 74704615 74707933 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
92 chr2 havana transcript 74704615 74706812 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
93 chr2 havana exon 74704615 74704724 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; exon_id "ENSMUSE00000819713"; exon_version "1"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
94 chr2 havana exon 74705971 74706118 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; exon_id "ENSMUSE00000690072"; exon_version "1"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
95 chr2 havana CDS 74706094 74706118 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; protein_id "ENSMUSP00000118904"; protein_version "2"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
96 chr2 havana start_codon 74706094 74706096 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
97 chr2 havana exon 74706514 74706812 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; exon_id "ENSMUSE00000729425"; exon_version "1"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
98 chr2 havana CDS 74706514 74706809 . + 2 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; protein_id "ENSMUSP00000118904"; protein_version "2"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
99 chr2 havana stop_codon 74706810 74706812 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; exon_number "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
100 chr2 havana five_prime_utr 74704615 74704724 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
101 chr2 havana five_prime_utr 74705971 74706093 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000151380"; transcript_version "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS79809"; havana_transcript "OTTMUST00000040119"; havana_transcript_version "3"; tag "basic"; transcript_support_level "2";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
102 chr2 ensembl_havana transcript 74704905 74707933 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
103 chr2 ensembl_havana exon 74704905 74706118 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; exon_id "ENSMUSE00000387604"; exon_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
104 chr2 ensembl_havana CDS 74705548 74706118 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; protein_id "ENSMUSP00000019749"; protein_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
105 chr2 ensembl_havana start_codon 74705548 74705550 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
106 chr2 ensembl_havana exon 74706514 74707933 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; exon_id "ENSMUSE00000749776"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
107 chr2 ensembl_havana CDS 74706514 74706809 . + 2 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; protein_id "ENSMUSP00000019749"; protein_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
108 chr2 ensembl_havana stop_codon 74706810 74706812 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
109 chr2 ensembl_havana five_prime_utr 74704905 74705547 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
110 chr2 ensembl_havana three_prime_utr 74706813 74707933 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000019749"; transcript_version "3"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16143"; havana_transcript "OTTMUST00000040000"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
111 chr2 havana transcript 74705152 74707307 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
112 chr2 havana exon 74705152 74706118 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; exon_id "ENSMUSE00000690069"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
113 chr2 havana CDS 74705548 74706118 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; protein_id "ENSMUSP00000088094"; protein_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
114 chr2 havana start_codon 74705548 74705550 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "1"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
115 chr2 havana exon 74706517 74707307 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; exon_id "ENSMUSE00000690067"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
116 chr2 havana CDS 74706517 74706809 . + 2 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; protein_id "ENSMUSP00000088094"; protein_version "4"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
117 chr2 havana stop_codon 74706810 74706812 . + 0 gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; exon_number "2"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
118 chr2 havana five_prime_utr 74705152 74705547 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
119 chr2 havana three_prime_utr 74706813 74707307 . + . gene_id "ENSMUSG00000027102"; gene_version "4"; transcript_id "ENSMUST00000074721"; transcript_version "5"; gene_name "Hoxd8"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000016550"; havana_gene_version "4"; transcript_name "Hoxd8-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS71077"; havana_transcript "OTTMUST00000040118"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
120 chr2 ensembl_havana gene 74711927 74748442 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
121 chr2 ensembl_havana transcript 74711927 74748271 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
122 chr2 ensembl_havana exon 74711927 74712316 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; exon_id "ENSMUSE00001334697"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
123 chr2 ensembl_havana exon 74743928 74744555 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; exon_id "ENSMUSE00001328611"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
124 chr2 ensembl_havana CDS 74744012 74744555 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; protein_id "ENSMUSP00000107614"; protein_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
125 chr2 ensembl_havana start_codon 74744012 74744014 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
126 chr2 ensembl_havana exon 74746322 74748271 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; exon_id "ENSMUSE00000690056"; exon_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
127 chr2 ensembl_havana CDS 74746322 74747076 . + 2 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; protein_id "ENSMUSP00000107614"; protein_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
128 chr2 ensembl_havana stop_codon 74747077 74747079 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
129 chr2 ensembl_havana five_prime_utr 74711927 74712316 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
130 chr2 ensembl_havana five_prime_utr 74743928 74744011 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
131 chr2 ensembl_havana three_prime_utr 74747080 74748271 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111983"; transcript_version "8"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-203"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040120"; havana_transcript_version "15"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
132 chr2 havana transcript 74732913 74744214 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
133 chr2 havana exon 74732913 74733040 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; exon_id "ENSMUSE00000729707"; exon_version "2"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
134 chr2 havana exon 74743928 74744214 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; exon_id "ENSMUSE00000710772"; exon_version "2"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
135 chr2 havana CDS 74744012 74744214 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; protein_id "ENSMUSP00000134633"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
136 chr2 havana start_codon 74744012 74744014 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
137 chr2 havana five_prime_utr 74732913 74733040 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
138 chr2 havana five_prime_utr 74743928 74744011 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000144544"; transcript_version "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-205"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040125"; havana_transcript_version "5"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
139 chr2 havana transcript 74736515 74747915 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
140 chr2 havana exon 74736515 74736705 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; exon_id "ENSMUSE00000690055"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
141 chr2 havana exon 74743928 74744555 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; exon_id "ENSMUSE00001328611"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
142 chr2 havana CDS 74744012 74744555 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; protein_id "ENSMUSP00000107613"; protein_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
143 chr2 havana start_codon 74744012 74744014 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
144 chr2 havana exon 74746322 74747915 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; exon_id "ENSMUSE00000690054"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
145 chr2 havana CDS 74746322 74747076 . + 2 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; protein_id "ENSMUSP00000107613"; protein_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
146 chr2 havana stop_codon 74747077 74747079 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
147 chr2 havana five_prime_utr 74736515 74736705 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
148 chr2 havana five_prime_utr 74743928 74744011 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
149 chr2 havana three_prime_utr 74747080 74747915 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000111982"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040123"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
150 chr2 havana transcript 74739619 74747900 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
151 chr2 havana exon 74739619 74739703 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; exon_id "ENSMUSE00000690052"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
152 chr2 havana exon 74743928 74744555 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; exon_id "ENSMUSE00001328611"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
153 chr2 havana CDS 74744012 74744555 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; protein_id "ENSMUSP00000044809"; protein_version "6"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
154 chr2 havana start_codon 74744012 74744014 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
155 chr2 havana exon 74746322 74747900 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; exon_id "ENSMUSE00000566207"; exon_version "2"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
156 chr2 havana CDS 74746322 74747076 . + 2 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; protein_id "ENSMUSP00000044809"; protein_version "6"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
157 chr2 havana stop_codon 74747077 74747079 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; exon_number "3"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
158 chr2 havana five_prime_utr 74739619 74739703 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
159 chr2 havana five_prime_utr 74743928 74744011 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
160 chr2 havana three_prime_utr 74747080 74747900 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000047830"; transcript_version "7"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS38149"; havana_transcript "OTTMUST00000040124"; havana_transcript_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
161 chr2 havana transcript 74745674 74746596 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
162 chr2 havana exon 74745674 74746220 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; exon_id "ENSMUSE00000738733"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
163 chr2 havana CDS 74746157 74746220 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; protein_id "ENSMUSP00000134616"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
164 chr2 havana start_codon 74746157 74746159 . + 0 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
165 chr2 havana exon 74746322 74746596 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; exon_id "ENSMUSE00000837851"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
166 chr2 havana CDS 74746322 74746596 . + 2 gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; exon_number "2"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; protein_id "ENSMUSP00000134616"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
167 chr2 havana five_prime_utr 74745674 74746156 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000140666"; transcript_version "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; havana_transcript "OTTMUST00000040126"; havana_transcript_version "3"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
168 chr2 havana transcript 74745722 74748442 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000190553"; transcript_version "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-206"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000120192"; havana_transcript_version "1"; tag "mRNA_end_NF"; transcript_support_level "NA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
169 chr2 havana exon 74745722 74748442 . + . gene_id "ENSMUSG00000079277"; gene_version "9"; transcript_id "ENSMUST00000190553"; transcript_version "1"; exon_number "1"; gene_name "Hoxd3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045589"; havana_gene_version "14"; transcript_name "Hoxd3-206"; transcript_source "havana"; transcript_biotype "retained_intron"; havana_transcript "OTTMUST00000120192"; havana_transcript_version "1"; exon_id "ENSMUSE00001319756"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "NA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
170 chr2 ensembl_havana gene 74711929 74729160 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
171 chr2 havana transcript 74711929 74728868 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
172 chr2 havana exon 74711929 74712316 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000690059"; exon_version "2"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
173 chr2 havana exon 74722553 74722631 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00001456804"; exon_version "1"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
174 chr2 havana exon 74723332 74723367 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00001459290"; exon_version "1"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
175 chr2 havana exon 74725463 74725597 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "4"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000766717"; exon_version "1"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
176 chr2 havana exon 74725845 74725978 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000795268"; exon_version "1"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
177 chr2 havana exon 74726876 74726932 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000795377"; exon_version "1"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
178 chr2 havana exon 74728359 74728868 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000144040"; transcript_version "8"; exon_number "7"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; havana_transcript "OTTMUST00000040121"; havana_transcript_version "16"; exon_id "ENSMUSE00000723430"; exon_version "2"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
179 chr2 ensembl transcript 74721978 74729160 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
180 chr2 ensembl exon 74721978 74722177 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000330193"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
181 chr2 ensembl exon 74722553 74722631 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00001456804"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
182 chr2 ensembl exon 74723332 74723367 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00001459290"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
183 chr2 ensembl exon 74725463 74725978 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "4"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000330175"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
184 chr2 ensembl exon 74726876 74727705 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000476301"; exon_version "1"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
185 chr2 ensembl CDS 74727279 74727705 . + 0 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; protein_id "ENSMUSP00000047949"; protein_version "3"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
186 chr2 ensembl start_codon 74727279 74727281 . + 0 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "5"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
187 chr2 ensembl exon 74728262 74729160 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; exon_id "ENSMUSE00000479221"; exon_version "2"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
188 chr2 ensembl CDS 74728262 74728584 . + 2 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; protein_id "ENSMUSP00000047949"; protein_version "3"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
189 chr2 ensembl stop_codon 74728585 74728587 . + 0 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; exon_number "6"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
190 chr2 ensembl five_prime_utr 74721978 74722177 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
191 chr2 ensembl five_prime_utr 74722553 74722631 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
192 chr2 ensembl five_prime_utr 74723332 74723367 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
193 chr2 ensembl five_prime_utr 74725463 74725978 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
194 chr2 ensembl five_prime_utr 74726876 74727278 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
195 chr2 ensembl three_prime_utr 74728588 74729160 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000047904"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-201"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; tag "basic"; transcript_support_level "5";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
196 chr2 havana transcript 74727074 74729123 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
197 chr2 havana exon 74727074 74727705 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; exon_id "ENSMUSE00000690044"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
198 chr2 havana CDS 74727279 74727705 . + 0 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; protein_id "ENSMUSP00000107611"; protein_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
199 chr2 havana start_codon 74727279 74727281 . + 0 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "1"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
200 chr2 havana exon 74728262 74729123 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; exon_id "ENSMUSE00000690043"; exon_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
201 chr2 havana CDS 74728262 74728584 . + 2 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; protein_id "ENSMUSP00000107611"; protein_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
202 chr2 havana stop_codon 74728585 74728587 . + 0 gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; exon_number "2"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
203 chr2 havana five_prime_utr 74727074 74727278 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
204 chr2 havana three_prime_utr 74728588 74729123 . + . gene_id "ENSMUSG00000101174"; gene_version "8"; transcript_id "ENSMUST00000111980"; transcript_version "3"; gene_name "Hoxd4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000019164"; havana_gene_version "17"; transcript_name "Hoxd4-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS16145"; havana_transcript "OTTMUST00000040129"; havana_transcript_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
205 chr2 mirbase gene 74726070 74726137 . + . gene_id "ENSMUSG00000065500"; gene_version "3"; gene_name "Mir10b"; gene_source "mirbase"; gene_biotype "miRNA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
206 chr2 mirbase transcript 74726070 74726137 . + . gene_id "ENSMUSG00000065500"; gene_version "3"; transcript_id "ENSMUST00000083566"; transcript_version "3"; gene_name "Mir10b"; gene_source "mirbase"; gene_biotype "miRNA"; transcript_name "Mir10b-201"; transcript_source "mirbase"; transcript_biotype "miRNA"; tag "basic"; transcript_support_level "NA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
207 chr2 mirbase exon 74726070 74726137 . + . gene_id "ENSMUSG00000065500"; gene_version "3"; transcript_id "ENSMUST00000083566"; transcript_version "3"; exon_number "1"; gene_name "Mir10b"; gene_source "mirbase"; gene_biotype "miRNA"; transcript_name "Mir10b-201"; transcript_source "mirbase"; transcript_biotype "miRNA"; exon_id "ENSMUSE00000522725"; exon_version "3"; tag "basic"; transcript_support_level "NA";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
208 chr2 havana gene 74726728 74747918 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
209 chr2 havana transcript 74726728 74747918 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
210 chr2 havana exon 74726728 74727705 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00000644413"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
211 chr2 havana CDS 74727279 74727705 . + 0 gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; protein_id "ENSMUSP00000051355"; protein_version "6"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
212 chr2 havana start_codon 74727279 74727281 . + 0 gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "1"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
213 chr2 havana exon 74728359 74728682 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "2"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00000644412"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
214 chr2 havana CDS 74728359 74728363 . + 2 gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "2"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; protein_id "ENSMUSP00000051355"; protein_version "6"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
215 chr2 havana stop_codon 74728364 74728366 . + 0 gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "2"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
216 chr2 havana exon 74743928 74744555 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "3"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00001323912"; exon_version "1"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
217 chr2 havana exon 74746322 74747918 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; exon_number "4"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; exon_id "ENSMUSE00000601603"; exon_version "3"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
218 chr2 havana five_prime_utr 74726728 74727278 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
219 chr2 havana three_prime_utr 74728367 74728682 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
220 chr2 havana three_prime_utr 74743928 74744555 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";
adab852c8216 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
221 chr2 havana three_prime_utr 74746322 74747918 . + . gene_id "ENSMUSG00000100642"; gene_version "1"; transcript_id "ENSMUST00000053932"; transcript_version "6"; gene_name "Gm28230"; gene_source "havana"; gene_biotype "protein_coding"; havana_gene "OTTMUSG00000045590"; havana_gene_version "1"; transcript_name "Gm28230-201"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; havana_transcript "OTTMUST00000040122"; havana_transcript_version "2"; tag "basic"; transcript_support_level "1";