Mercurial > repos > iuc > homer_annotatepeaks
comparison macros.xml @ 0:adab852c8216 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
|---|---|
| date | Sun, 08 Aug 2021 11:03:29 +0000 |
| parents | |
| children | 38d10a69748a |
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| -1:000000000000 | 0:adab852c8216 |
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| 1 <macros> | |
| 2 <token name="@TOOL_VERSION@">4.11</token> | |
| 3 <!-- HOMER index version compatible with this version of HOMER | |
| 4 This is the HOMER version that introduced the preparsed structure expected | |
| 5 by the current version. --> | |
| 6 <token name="@IDX_VERSION@">4.11</token> | |
| 7 <token name="@VERSION_SUFFIX@">0</token> | |
| 8 <xml name="xrefs"> | |
| 9 <xrefs> | |
| 10 <xref type="bio.tools">homer</xref> | |
| 11 </xrefs> | |
| 12 </xml> | |
| 13 <xml name="requirements"> | |
| 14 <requirements> | |
| 15 <requirement type="package" version="4.11">homer</requirement> | |
| 16 </requirements> | |
| 17 </xml> | |
| 18 <xml name="choose_center"> | |
| 19 <conditional name="choose_center"> | |
| 20 <param name="center" type="select" label="Do you want to center your sequence on the peak center?"> | |
| 21 <option value="centered" selected="True">Yes</option> | |
| 22 <option value="manual">No, I want asymetric (raise an error if given was chosen above)</option> | |
| 23 </param> | |
| 24 <when value="centered"/> | |
| 25 <when value="manual"> | |
| 26 <param name="sizes" type="integer" value="-100" label="sequence start relative to center"/> | |
| 27 </when> | |
| 28 </conditional> | |
| 29 </xml> | |
| 30 <xml name="mask_size"> | |
| 31 <param argument="-mask" type="boolean" truevalue="True" falsevalue="False" label="mask repeats/lower case sequence"/> | |
| 32 <conditional name="fixed_size"> | |
| 33 <param name="size_fixed" type="select" label="Do you want a fixed fragment size?"> | |
| 34 <option value="fixed" selected="True">Yes</option> | |
| 35 <option value="given">No, I want to keep the size of my peaks (-size given)</option> | |
| 36 </param> | |
| 37 <when value="given"/> | |
| 38 <when value="fixed"> | |
| 39 <param argument="-size" type="integer" min="0" value="200" label="fragment size in bp"/> | |
| 40 <expand macro="choose_center"/> | |
| 41 </when> | |
| 42 </conditional> | |
| 43 </xml> | |
| 44 <xml name="citation"> | |
| 45 <citations> | |
| 46 <citation type="doi">10.1016/j.molcel.2010.05.004</citation> | |
| 47 </citations> | |
| 48 </xml> | |
| 49 </macros> |