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comparison test-data/motif_test1/homerResults/motif7.info.html @ 0:adab852c8216 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:03:29 +0000
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1 <HTML><HEAD><TITLE>Motif 7</TITLE></HEAD>
2 <H2>Information for 1-CCCTAATG (Motif 7)</H2>
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47
48 <BR>
49 Reverse Opposite:<BR/><svg width="205" height="50">
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91 </g>
92 </svg>
93 <BR>
94 <TABLE border="1" cellpading="0" cellspacing="0">
95 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
96 <TR><TD>log p-value:</TD><TD>-2.898e+00</TD></TR>
97 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
98 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
99 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
100 <TR><TD>Number of Background Sequences with motif</TD><TD>221.6</TD></TR>
101 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.53%</TD></TR>
102 <TR><TD>Average Position of motif in Targets</TD><TD>98.0 +/- 0.0bp</TD></TR>
103 <TR><TD>Average Position of motif in Background</TD><TD>97.0 +/- 70.2bp</TD></TR>
104 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
105 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
106 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif7.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif7RV.motif">reverse opposite</A></TD></TR>
107 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif7.logo.svg">forward logo</A><BR/><A HREF="motif7RV.logo.svg">reverse opposite</A></TD></TR>
108 </TABLE>
109 <H3>Matches to Known Motifs</H3>
110 <TABLE border="1" cellpading="0" cellspacing="0">
111 <TR><TD>
112 <H4>HNRNPA1L2(RRM)/Homo_sapiens-RNCMPT00023-PBM/HughesRNA</H4>
113 <TABLE><TR><TD>
114 <TABLE>
115 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
116 <TR><TD>Score:</TD><TD>0.81</TD</TR>
117 <TR><TD>Offset:</TD><TD>-1</TD</TR>
118 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
119 <TR><TD>Alignment:</TD><TD><FONT face="courier">-CCCTAATG</FONT><BR><FONT face="courier">TCCCTAA--</FONT></TD></TR></TABLE>
120 </TD><TD>
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222 </TD></TR></TABLE>
223 </TD></TR>
224 <TR><TD>
225 <H4>zen/dmmpmm(Noyes_hd)/fly</H4>
226 <TABLE><TR><TD>
227 <TABLE>
228 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
229 <TR><TD>Score:</TD><TD>0.80</TD</TR>
230 <TR><TD>Offset:</TD><TD>0</TD</TR>
231 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
232 <TR><TD>Alignment:</TD><TD><FONT face="courier">CCCTAATG--</FONT><BR><FONT face="courier">CCCTAATGAA</FONT></TD></TR></TABLE>
233 </TD><TD>
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346 </TD></TR>
347 <TR><TD>
348 <H4>HNRNPA1(RRM)/Homo_sapiens-RNCMPT00022-PBM/HughesRNA</H4>
349 <TABLE><TR><TD>
350 <TABLE>
351 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
352 <TR><TD>Score:</TD><TD>0.79</TD</TR>
353 <TR><TD>Offset:</TD><TD>-1</TD</TR>
354 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
355 <TR><TD>Alignment:</TD><TD><FONT face="courier">-CCCTAATG</FONT><BR><FONT face="courier">TCCCTAN--</FONT></TD></TR></TABLE>
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459 </TD></TR>
460 <TR><TD>
461 <H4>TBF1/MA0403.1/Jaspar</H4>
462 <TABLE><TR><TD>
463 <TABLE>
464 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
465 <TR><TD>Score:</TD><TD>0.77</TD</TR>
466 <TR><TD>Offset:</TD><TD>-2</TD</TR>
467 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
468 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">AACCCTAA--</FONT></TD></TR></TABLE>
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582 </TD></TR>
583 <TR><TD>
584 <H4>TBF1/MA0403.1/Jaspar</H4>
585 <TABLE><TR><TD>
586 <TABLE>
587 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
588 <TR><TD>Score:</TD><TD>0.77</TD</TR>
589 <TR><TD>Offset:</TD><TD>-2</TD</TR>
590 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
591 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">AACCCTAA--</FONT></TD></TR></TABLE>
592 </TD><TD>
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706 <TR><TD>
707 <H4>HNRNPA2B1(RRM)/Homo_sapiens-RNCMPT00024-PBM/HughesRNA</H4>
708 <TABLE><TR><TD>
709 <TABLE>
710 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
711 <TR><TD>Score:</TD><TD>0.77</TD</TR>
712 <TR><TD>Offset:</TD><TD>-1</TD</TR>
713 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
714 <TR><TD>Alignment:</TD><TD><FONT face="courier">-CCCTAATG</FONT><BR><FONT face="courier">TCCCTAN--</FONT></TD></TR></TABLE>
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819 <TR><TD>
820 <H4>TBP3/MA1355.1/Jaspar</H4>
821 <TABLE><TR><TD>
822 <TABLE>
823 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
824 <TR><TD>Score:</TD><TD>0.76</TD</TR>
825 <TR><TD>Offset:</TD><TD>-7</TD</TR>
826 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
827 <TR><TD>Alignment:</TD><TD><FONT face="courier">-------CCCTAATG</FONT><BR><FONT face="courier">AATTAAACCCTAATT</FONT></TD></TR></TABLE>
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991 </TD></TR>
992 <TR><TD>
993 <H4>TRB2/MA1073.1/Jaspar</H4>
994 <TABLE><TR><TD>
995 <TABLE>
996 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
997 <TR><TD>Score:</TD><TD>0.75</TD</TR>
998 <TR><TD>Offset:</TD><TD>-2</TD</TR>
999 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1000 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">TGCCCTAA--</FONT></TD></TR></TABLE>
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1113 </TD></TR></TABLE>
1114 </TD></TR>
1115 <TR><TD>
1116 <H4>RPH1/MA0372.1/Jaspar</H4>
1117 <TABLE><TR><TD>
1118 <TABLE>
1119 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
1120 <TR><TD>Score:</TD><TD>0.75</TD</TR>
1121 <TR><TD>Offset:</TD><TD>-2</TD</TR>
1122 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1123 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">ACCCCTAA--</FONT></TD></TR></TABLE>
1124 </TD><TD>
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1237 </TD></TR>
1238 <TR><TD>
1239 <H4>RPH1/MA0372.1/Jaspar</H4>
1240 <TABLE><TR><TD>
1241 <TABLE>
1242 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
1243 <TR><TD>Score:</TD><TD>0.75</TD</TR>
1244 <TR><TD>Offset:</TD><TD>-2</TD</TR>
1245 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
1246 <TR><TD>Alignment:</TD><TD><FONT face="courier">--CCCTAATG</FONT><BR><FONT face="courier">ACCCCTAA--</FONT></TD></TR></TABLE>
1247 </TD><TD>
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