Mercurial > repos > iuc > homer_annotatepeaks
comparison tool-data/homer_preparse.loc.sample @ 0:adab852c8216 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
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| date | Sun, 08 Aug 2021 11:03:29 +0000 |
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| -1:000000000000 | 0:adab852c8216 |
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| 1 # homer_preparse.loc.sample | |
| 2 # This is a *.loc.sample file distributed with Galaxy that enables tools | |
| 3 # to use a directory of indexed data files. This one is for Homer preparsed genomes. | |
| 4 # The file should include an one line entry for each index set. | |
| 5 # The path points to the "directory" for the set, not a specific file. | |
| 6 # It has six text columns seperated by TABS. | |
| 7 # | |
| 8 # <unique_preparse_id> <dbkey> <mask> <size> <display_name> <directory_path> <path_fasta> <version> | |
| 9 # | |
| 10 # So, for example, if you had phiX174 preparsed with 200bp stored in: | |
| 11 # | |
| 12 # /tmp/phix_200 | |
| 13 # | |
| 14 # containing phiX174.fasta.200.* files, such as: | |
| 15 # -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.cgbins | |
| 16 # -rw-r--r-- 1 ldelisle ldelisle 249K Jul 9 10:14 phiX174.fasta.200.cgfreq | |
| 17 # -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.gcbins | |
| 18 # -rw-r--r-- 1 ldelisle ldelisle 169K Jul 9 10:14 phiX174.fasta.200.pos | |
| 19 # -rw-r--r-- 1 ldelisle ldelisle 955K Jul 9 10:14 phiX174.fasta.200.seq | |
| 20 # | |
| 21 # then the homer_preparse.loc entry could look like this: | |
| 22 # | |
| 23 # phiX174_200 phiX174 False 200 phiX174 (200bp) /tmp/phix_200 /tmp/phiX174.fasta 4.11 | |
| 24 # | |
| 25 # |