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comparison test-data/demoDB/homerResults_fasta.html @ 3:fa7c3a74acf2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
author iuc
date Thu, 06 Apr 2023 16:24:36 +0000
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1 <HTML><HEAD><TITLE>.// - Homer de novo Motif Results</TITLE></HEAD>
2 <BODY>
3 <H1>Homer <i>de novo</i> Motif Results (.//)</H1>
4 <A HREF="knownResults.html">Known Motif Enrichment Results</A><BR/>
5 <A HREF="geneOntology.html">Gene Ontology Enrichment Results</A><BR/>
6 If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into
7 <A HREF="http://www.benoslab.pitt.edu/stamp/">STAMP</A><BR/>
8 More information on motif finding results: <A HREF="http://biowhat.ucsd.edu/homer/">HOMER</A>
9 | <A HREF="http://biowhat.ucsd.edu/homer/motif/index.html">Description of Results</A>
10 | <A HREF="http://biowhat.ucsd.edu/homer/motif/practicalTips.html">Tips</A>
11 <BR/>
12 Total target sequences = 15<BR/>
13 Total background sequences = 68<BR/>
14 <FONT color="red">* - possible false positive</FONT><BR/>
15 <TABLE border="1" cellpading="0" cellspacing="0">
16 <TR><TD>Rank</TD><TD>Motif</TD><TD>P-value</TD><TD>log P-pvalue</TD><TD>% of Targets</TD><TD>% of Background</TD>
17 <TD>STD(Bg STD)</TD>
18 <TD>Best Match/Details</TD><TD>Motif File</TD></TR>
19 <TR><TD>1
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66
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81
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84 </TD><TD>1e-5</TD><TD>-1.200e+01</TD><TD>53.33%</TD><TD>2.94%</TD><TD>111.3bp (46.0bp)</TD><TD>Unknown6/Drosophila-Promoters/Homer(0.818)<BR/><A target="_blank" HREF="homerResults/motif1.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif1.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif1.motif">motif file (matrix)</A></TD></TR>
85 <TR><TD>2
86 <FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
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92
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107
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112
113 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,127,49)">A</text>
114 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,125,48.95)">C</text>
115 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.165,125,48.9)">G</text>
116 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.833,126,40.65)">T</text>
117
118 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,152,49)">A</text>
119 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,150,48.95)">C</text>
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122
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130 </TD><TD>1e-4</TD><TD>-1.139e+01</TD><TD>46.67%</TD><TD>1.47%</TD><TD>122.7bp (0.0bp)</TD><TD>NAC078/MA1677.1/Jaspar(0.916)<BR/><A target="_blank" HREF="homerResults/motif2.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif2.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif2.motif">motif file (matrix)</A></TD></TR>
131 <TR><TD>3
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138
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186 </TD><TD>1e-3</TD><TD>-9.177e+00</TD><TD>33.33%</TD><TD>0.00%</TD><TD>121.8bp (0.0bp)</TD><TD>PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer(0.746)<BR/><A target="_blank" HREF="homerResults/motif3.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif3.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif3.motif">motif file (matrix)</A></TD></TR>
187 <TR><TD>4
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228 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.997,177,48.85)">A</text>
229
230 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,200,49)">C</text>
231 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,201,48.95)">T</text>
232 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.132,200,48.9)">G</text>
233 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.866,202,42.3)">A</text>
234
235 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,225,49)">C</text>
236 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,225,48.95)">G</text>
237 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.132,226,48.9)">T</text>
238 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.866,227,42.3)">A</text>
239
240 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,250,49)">C</text>
241 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,250,48.95)">G</text>
242 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,251,48.9)">T</text>
243 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.997,252,48.85)">A</text>
244
245 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,275,49)">C</text>
246 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,275,48.95)">G</text>
247 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,276,48.9)">T</text>
248 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.997,277,48.85)">A</text>
249
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251 </svg>
252 </TD><TD>1e-3</TD><TD>-9.067e+00</TD><TD>66.67%</TD><TD>14.71%</TD><TD>114.1bp (83.7bp)</TD><TD>HuR(RRM)/Homo_sapiens-RNCMPT00274-PBM/HughesRNA(0.794)<BR/><A target="_blank" HREF="homerResults/motif4.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif4.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif4.motif">motif file (matrix)</A></TD></TR>
253 <TR><TD>5
254 <FONT color="red">*</FONT></TD><TD><svg width="255" height="50">
255 <g font-family="Arial" font-weight="bold" font-size="66.5">
256 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,0,49)">C</text>
257 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,48.95)">G</text>
258 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.179,2,48.9)">A</text>
259 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.819,1,39.95)">T</text>
260
261 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,27,49)">A</text>
262 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,25,48.95)">C</text>
263 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,25,48.9)">G</text>
264 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.997,26,48.85)">T</text>
265
266 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,52,49)">A</text>
267 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,50,48.95)">C</text>
268 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,51,48.9)">T</text>
269 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.997,50,48.85)">G</text>
270
271 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,75,49)">C</text>
272 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,75,48.95)">G</text>
273 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.179,76,48.9)">T</text>
274 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.819,77,39.95)">A</text>
275
276 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,100,49)">G</text>
277 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,101,48.95)">T</text>
278 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.179,100,48.9)">C</text>
279 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.819,102,39.95)">A</text>
280
281 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,127,49)">A</text>
282 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.180,125,48.95)">C</text>
283 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.244,125,39.95)">G</text>
284 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.575,126,27.75)">T</text>
285
286 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,150,49)">C</text>
287 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,151,48.95)">T</text>
288 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.179,150,48.9)">G</text>
289 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.819,152,39.95)">A</text>
290
291 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,175,49)">C</text>
292 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,176,48.95)">T</text>
293 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.197,177,48.9)">A</text>
294 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.801,175,39.05)">G</text>
295
296 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,200,49)">C</text>
297 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,200,48.95)">G</text>
298 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.261,201,48.9)">T</text>
299 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.737,202,35.85)">A</text>
300
301 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,225,49)">C</text>
302 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,225,48.95)">G</text>
303 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.360,227,48.9)">A</text>
304 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.638,226,30.9)">T</text>
305
306 </g>
307 </svg>
308 </TD><TD>1e-3</TD><TD>-8.883e+00</TD><TD>46.67%</TD><TD>4.41%</TD><TD>69.4bp (85.9bp)</TD><TD>PB0068.1_Sox1_1/Jaspar(0.716)<BR/><A target="_blank" HREF="homerResults/motif5.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif5.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif5.motif">motif file (matrix)</A></TD></TR>
309 <TR><TD>6
310 <FONT color="red">*</FONT></TD><TD><svg width="305" height="50">
311 <g font-family="Arial" font-weight="bold" font-size="66.5">
312 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.027,1,49)">T</text>
313 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.226,2,47.65)">A</text>
314 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.308,0,36.35)">G</text>
315 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.440,0,20.95)">C</text>
316
317 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,25,49)">C</text>
318 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,25,48.95)">G</text>
319 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.026,27,48.9)">A</text>
320 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.972,26,47.6)">T</text>
321
322 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,50,49)">C</text>
323 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,51,48.95)">T</text>
324 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.026,50,48.9)">G</text>
325 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.972,52,47.6)">A</text>
326
327 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,75,49)">C</text>
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329 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.026,77,48.9)">A</text>
330 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.972,76,47.6)">T</text>
331
332 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,102,49)">A</text>
333 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,100,48.95)">C</text>
334 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,100,48.9)">G</text>
335 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.997,101,48.85)">T</text>
336
337 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.220,125,49)">C</text>
338 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.221,127,38)">A</text>
339 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.226,125,26.95)">G</text>
340 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.333,126,15.65)">T</text>
341
342 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,150,49)">C</text>
343 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,151,48.95)">T</text>
344 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.219,150,48.9)">G</text>
345 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.779,152,37.95)">A</text>
346
347 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,175,49)">G</text>
348 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.225,176,48.95)">T</text>
349 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.246,175,37.7)">C</text>
350 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.528,177,25.4)">A</text>
351
352 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,202,49)">A</text>
353 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,200,48.95)">C</text>
354 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,200,48.9)">G</text>
355 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.997,201,48.85)">T</text>
356
357 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,225,49)">G</text>
358 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.220,226,48.95)">T</text>
359 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.225,225,37.95)">C</text>
360 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.554,227,26.7)">A</text>
361
362 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,250,49)">G</text>
363 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.026,251,48.95)">T</text>
364 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.091,252,47.65)">A</text>
365 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.882,250,43.1)">C</text>
366
367 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,276,49)">T</text>
368 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.026,275,48.95)">G</text>
369 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.220,275,47.65)">C</text>
370 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.753,277,36.65)">A</text>
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373 </svg>
374 </TD><TD>1e-3</TD><TD>-8.111e+00</TD><TD>40.00%</TD><TD>2.94%</TD><TD>66.2bp (36.0bp)</TD><TD>HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer(0.716)<BR/><A target="_blank" HREF="homerResults/motif6.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif6.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif6.motif">motif file (matrix)</A></TD></TR>
375 <TR><TD>7
376 <FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
377 <g font-family="Arial" font-weight="bold" font-size="66.5">
378 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,2,49)">A</text>
379 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,0,48.95)">C</text>
380 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,48.9)">G</text>
381 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.997,1,48.85)">T</text>
382
383 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,25,49)">G</text>
384 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.117,26,48.95)">T</text>
385 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.335,27,43.1)">A</text>
386 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.547,25,26.35)">C</text>
387
388 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,50,49)">C</text>
389 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,50,48.95)">G</text>
390 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.405,52,48.9)">A</text>
391 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.593,51,28.65)">T</text>
392
393 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,75,49)">C</text>
394 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,75,48.95)">G</text>
395 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.302,76,48.9)">T</text>
396 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.696,77,33.8)">A</text>
397
398 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,101,49)">T</text>
399 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.010,102,48.95)">A</text>
400 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.020,100,48.45)">C</text>
401 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.969,100,47.45)">G</text>
402
403 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,127,49)">A</text>
404 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,125,48.95)">C</text>
405 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,126,48.9)">T</text>
406 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.997,125,48.85)">G</text>
407
408 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,152,49)">A</text>
409 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,150,48.95)">G</text>
410 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,151,48.9)">T</text>
411 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.997,150,48.85)">C</text>
412
413 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,175,49)">C</text>
414 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,175,48.95)">G</text>
415 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,176,48.9)">T</text>
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419 </svg>
420 </TD><TD>1e-3</TD><TD>-8.111e+00</TD><TD>40.00%</TD><TD>2.94%</TD><TD>117.4bp (108.5bp)</TD><TD>MOT3/MA0340.1/Jaspar(0.778)<BR/><A target="_blank" HREF="homerResults/motif7.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif7.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif7.motif">motif file (matrix)</A></TD></TR>
421 <TR><TD>8
422 <FONT color="red">*</FONT></TD><TD><svg width="255" height="50">
423 <g font-family="Arial" font-weight="bold" font-size="66.5">
424 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,49)">G</text>
425 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,1,48.95)">T</text>
426 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.439,0,48.9)">C</text>
427 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.559,2,26.95)">A</text>
428
429 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,25,49)">G</text>
430 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,26,48.95)">T</text>
431 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.279,27,48.9)">A</text>
432 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.719,25,34.95)">C</text>
433
434 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,50,49)">C</text>
435 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,50,48.95)">G</text>
436 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,51,48.9)">T</text>
437 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.997,52,48.85)">A</text>
438
439 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,75,49)">G</text>
440 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,76,48.95)">T</text>
441 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.219,75,48.9)">C</text>
442 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.779,77,37.95)">A</text>
443
444 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,100,49)">C</text>
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463
464 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,202,49)">A</text>
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467 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.997,201,48.85)">T</text>
468
469 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,225,49)">C</text>
470 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,225,48.95)">G</text>
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476 </TD><TD>1e-3</TD><TD>-7.498e+00</TD><TD>33.33%</TD><TD>1.47%</TD><TD>78.4bp (0.0bp)</TD><TD>Pp_0206(RRM)/Physcomitrella_patens-RNCMPT00206-PBM/HughesRNA(0.823)<BR/><A target="_blank" HREF="homerResults/motif8.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif8.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif8.motif">motif file (matrix)</A></TD></TR>
477 <TR><TD>9
478 <FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
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481 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.074,0,48.95)">C</text>
482 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.147,1,45.25)">T</text>
483 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.778,2,37.9)">A</text>
484
485 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.074,27,49)">A</text>
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487 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.222,25,41.6)">G</text>
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493 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.694,50,33.7)">G</text>
494
495 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,75,49)">G</text>
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500 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,100,49)">C</text>
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503 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.718,100,34.9)">G</text>
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505 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,127,49)">A</text>
506 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.074,125,48.95)">G</text>
507 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.074,126,45.25)">T</text>
508 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.851,125,41.55)">C</text>
509
510 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,150,49)">C</text>
511 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,150,48.95)">G</text>
512 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.073,152,48.9)">A</text>
513 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.925,151,45.25)">T</text>
514
515 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.074,175,49)">G</text>
516 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.074,176,45.3)">T</text>
517 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.155,177,41.6)">A</text>
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521 </svg>
522 </TD><TD>1e-3</TD><TD>-7.368e+00</TD><TD>60.00%</TD><TD>14.71%</TD><TD>82.6bp (111.5bp)</TD><TD>ZC3H10(Znf)/Homo_sapiens-RNCMPT00085-PBM/HughesRNA(0.753)<BR/><A target="_blank" HREF="homerResults/motif9.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif9.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif9.motif">motif file (matrix)</A></TD></TR>
523 <TR><TD>10
524 <FONT color="red">*</FONT></TD><TD><svg width="305" height="50">
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527 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,48.95)">G</text>
528 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,1,48.9)">T</text>
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531 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,25,49)">C</text>
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553 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.198,126,39.1)">T</text>
554 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.604,127,29.2)">A</text>
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556 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,152,49)">A</text>
557 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.015,151,48.95)">T</text>
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559 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.756,150,36.8)">C</text>
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564 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.984,177,48.2)">A</text>
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566 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,201,49)">T</text>
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571 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,225,49)">G</text>
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588 </TD><TD>1e-3</TD><TD>-7.120e+00</TD><TD>40.00%</TD><TD>4.41%</TD><TD>82.9bp (107.9bp)</TD><TD>RLR1?/SacCer-Promoters/Homer(0.799)<BR/><A target="_blank" HREF="homerResults/motif10.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif10.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif10.motif">motif file (matrix)</A></TD></TR>
589 <TR><TD>11
590 <FONT color="red">*</FONT></TD><TD><svg width="205" height="50">
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593 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.072,0,48.95)">C</text>
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595 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.602,0,29.1)">G</text>
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597 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,25,49)">C</text>
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600 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.602,25,29.1)">G</text>
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602 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,50,49)">G</text>
603 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.010,51,48.95)">T</text>
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607 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,76,49)">T</text>
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612 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,100,49)">G</text>
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621
622 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.010,150,49)">C</text>
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625 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.654,151,31.7)">T</text>
626
627 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,175,49)">C</text>
628 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.118,176,48.95)">T</text>
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630 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.664,175,32.2)">G</text>
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634 </TD><TD>1e-2</TD><TD>-5.714e+00</TD><TD>26.67%</TD><TD>1.47%</TD><TD>125.4bp (0.0bp)</TD><TD>brk/dmmpmm(Papatsenko)/fly(0.807)<BR/><A target="_blank" HREF="homerResults/motif11.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif11.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif11.motif">motif file (matrix)</A></TD></TR>
635 </TABLE>
636 <P></P>
637 </BODY></HTML>