Mercurial > repos > iuc > homer_findmotifsgenome

annotate test-data/motif_test1/homerResults/motif4.similar.html @ 4:081139509124 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:01:41 +0000
parents ec974e69e0b5
children
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1 <HTML><HEAD><TITLE>motif4</TITLE></HEAD>
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2 <H2>Information for motif4</H2>
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3 <svg width="305" height="50">
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4 <g font-family="Arial" font-weight="bold" font-size="66.5">
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iuc
parents:
diff changeset
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iuc
parents:
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iuc
parents:
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iuc
parents:
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iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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96 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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97 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,125,39)">G</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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98 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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100 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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101 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,44)">G</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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102 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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103 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,150,34)">C</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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105 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,49)">C</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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106 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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107 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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108 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,177,34)">A</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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110 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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111 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,44)">C</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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112 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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113 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,200,34)">G</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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115 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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116 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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117 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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118 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,225,34)">G</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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120 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,250,49)">C</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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121 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,250,44)">G</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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122 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,251,39)">T</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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123 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,252,34)">A</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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125 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,277,49)">A</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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126 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,44)">C</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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127 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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128 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,275,34)">G</text>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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130 </g>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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131 </svg>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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132 <BR/>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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133 <TABLE border="1" cellpading="0" cellspacing="0">
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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134 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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135 <TR><TD>log p-value:</TD><TD>-2.912e+00</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
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136 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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137 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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138 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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139 <TR><TD>Number of Background Sequences with motif</TD><TD>218.1</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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140 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.44%</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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141 <TR><TD>Average Position of motif in Targets</TD><TD>180.0 +/- 0.0bp</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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142 <TR><TD>Average Position of motif in Background</TD><TD>95.7 +/- 83.7bp</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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143 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
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144 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
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145 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif4.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif4RV.motif">reverse opposite</A></TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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146 </TABLE>
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147 <H3>Similar de novo motifs found</H3>
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148 <TABLE border="1" cellpading="0" cellspacing="0">
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149 <TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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150 <TR><TD>1</TD><TD>0.913</TD><TD><svg width="255" height="50">
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151 <g font-family="Arial" font-weight="bold" font-size="66.5">
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152 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
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156
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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202 </g>
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203 </svg>
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205 </TD><TD>1e-1</TD><TD>-2.902420</TD><TD>100.00%</TD><TD>5.49%</TD><TD><A target="_blank" HREF="motif4.similar1.motif">motif file (matrix)</A></TD></TR>
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206 <TR><TD>2</TD><TD>0.714</TD><TD><svg width="205" height="50">
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207 <g font-family="Arial" font-weight="bold" font-size="66.5">
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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248 </g>
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249 </svg>
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ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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251 </TD><TD>1e-1</TD><TD>-2.897885</TD><TD>100.00%</TD><TD>5.54%</TD><TD><A target="_blank" HREF="motif4.similar2.motif">motif file (matrix)</A></TD></TR>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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252 </TABLE>
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253 <P></P>
ec974e69e0b5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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254 </BODY></HTML>