Mercurial > repos > iuc > homer_findmotifsgenome
diff test-data/demoDB/homerResults_id.html @ 3:4fe92af4542b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
| author | iuc |
|---|---|
| date | Thu, 06 Apr 2023 16:22:23 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/demoDB/homerResults_id.html Thu Apr 06 16:22:23 2023 +0000 @@ -0,0 +1,637 @@ +<HTML><HEAD><TITLE>.// - Homer de novo Motif Results</TITLE></HEAD> +<BODY> +<H1>Homer <i>de novo</i> Motif Results (.//)</H1> +<A HREF="knownResults.html">Known Motif Enrichment Results</A><BR/> +<A HREF="geneOntology.html">Gene Ontology Enrichment Results</A><BR/> +If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into +<A HREF="http://www.benoslab.pitt.edu/stamp/">STAMP</A><BR/> +More information on motif finding results: <A HREF="http://biowhat.ucsd.edu/homer/">HOMER</A> + | <A HREF="http://biowhat.ucsd.edu/homer/motif/index.html">Description of Results</A> + | <A HREF="http://biowhat.ucsd.edu/homer/motif/practicalTips.html">Tips</A> +<BR/> +Total target sequences = 15<BR/> +Total background sequences = 68<BR/> +<FONT color="red">* - possible false positive</FONT><BR/> +<TABLE border="1" cellpading="0" cellspacing="0"> +<TR><TD>Rank</TD><TD>Motif</TD><TD>P-value</TD><TD>log P-pvalue</TD><TD>% of Targets</TD><TD>% of Background</TD> +<TD>STD(Bg STD)</TD> +<TD>Best Match/Details</TD><TD>Motif File</TD></TR> +<TR><TD>1 +<FONT color="red">*</FONT></TD><TD><svg width="305" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,0,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,48.95)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.271,2,48.9)">A</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.727,1,35.35)">T</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,27,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,25,48.95)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.223,25,48.9)">G</text> + <text fill="#DD0000" x="0" 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target="_blank" HREF="homerResults/motif1.motif">motif file (matrix)</A></TD></TR> +<TR><TD>2 +<FONT color="red">*</FONT></TD><TD><svg width="205" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,2,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,0,48.95)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,48.9)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.997,1,48.85)">T</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,25,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.074,25,48.95)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.112,27,45.25)">A</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.813,26,39.65)">T</text> + + <text fill="#0000EE" x="0" y="0" 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target="blank" HREF="homerResults/motif7.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif7.motif">motif file (matrix)</A></TD></TR> +<TR><TD>8 +<FONT color="red">*</FONT></TD><TD><svg width="255" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,49)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,1,48.95)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.439,0,48.9)">C</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.559,2,26.95)">A</text> + + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,25,49)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,26,48.95)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.279,27,48.9)">A</text> + <text fill="#0000EE" x="0" y="0" 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transform="matrix(0.55,0,0,0.001,175,48.95)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,176,48.9)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.997,175,48.85)">C</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,202,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,200,48.95)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,200,48.9)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.997,201,48.85)">T</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.001,225,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,225,48.95)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.339,227,48.9)">A</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.659,226,31.95)">T</text> + + </g> +</svg> +</TD><TD>1e-3</TD><TD>-7.498e+00</TD><TD>33.33%</TD><TD>1.47%</TD><TD>78.4bp (0.0bp)</TD><TD>SD0003.1_at_AC_acceptor/Jaspar(0.617)<BR/><A target="_blank" HREF="homerResults/motif8.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif8.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif8.motif">motif file (matrix)</A></TD></TR> +<TR><TD>9 +<FONT color="red">*</FONT></TD><TD><svg width="205" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,0,49)">G</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.074,0,48.95)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.147,1,45.25)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.778,2,37.9)">A</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.074,27,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.074,25,45.3)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.222,25,41.6)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.630,26,30.5)">T</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.060,50,49)">C</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.074,52,46)">A</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.172,51,42.3)">T</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.694,50,33.7)">G</text> + + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,75,49)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.098,76,48.95)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.148,77,44.05)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.753,75,36.65)">C</text> + + <text fill="#0000EE" x="0" y="0" 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transform="matrix(0.65,0,0,0.925,151,45.25)">T</text> + + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.074,175,49)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.074,176,45.3)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.155,177,41.6)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.697,175,33.85)">C</text> + + </g> +</svg> +</TD><TD>1e-3</TD><TD>-7.368e+00</TD><TD>60.00%</TD><TD>14.71%</TD><TD>82.6bp (111.5bp)</TD><TD>POL010.1_DCE_S_III/Jaspar(0.688)<BR/><A target="_blank" HREF="homerResults/motif9.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif9.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif9.motif">motif file (matrix)</A></TD></TR> +<TR><TD>10 +<FONT color="red">*</FONT></TD><TD><svg width="305" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#0000EE" x="0" y="0" 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transform="matrix(0.59,0,0,0.001,275,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.001,275,48.95)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.001,276,48.9)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.997,277,48.85)">A</text> + + </g> +</svg> +</TD><TD>1e-3</TD><TD>-7.120e+00</TD><TD>40.00%</TD><TD>4.41%</TD><TD>82.9bp (107.9bp)</TD><TD>ceh-38/MA1699.1/Jaspar(0.693)<BR/><A target="_blank" HREF="homerResults/motif10.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif10.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif10.motif">motif file (matrix)</A></TD></TR> +<TR><TD>11 +<FONT color="red">*</FONT></TD><TD><svg width="205" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.001,2,49)">A</text> + <text fill="#0000EE" x="0" y="0" 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target="blank" HREF="homerResults/motif11.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif11.motif">motif file (matrix)</A></TD></TR> +</TABLE> +<P></P> +</BODY></HTML>