Mercurial > repos > iuc > homer_findmotifsgenome
diff test-data/motif_test1/homerResults/motif5.info.html @ 0:ec974e69e0b5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
|---|---|
| date | Sun, 08 Aug 2021 11:02:42 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/motif_test1/homerResults/motif5.info.html Sun Aug 08 11:02:42 2021 +0000 @@ -0,0 +1,1593 @@ +<HTML><HEAD><TITLE>Motif 5</TITLE></HEAD> +<H2>Information for 2-ATCAAGATGA (Motif 5)</H2> +<svg width="255" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,44)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,2,34)">A</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,39)">G</text> + <text fill="#DD0000" x="0" y="0" 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motif</TD><TD>5.48%</TD></TR> +<TR><TD>Average Position of motif in Targets</TD><TD>113.0 +/- 0.0bp</TD></TR> +<TR><TD>Average Position of motif in Background</TD><TD>94.6 +/- 75.6bp</TD></TR> +<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR> +<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR> +<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif5.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif5RV.motif">reverse opposite</A></TD></TR> +<TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif5.logo.svg">forward logo</A><BR/><A HREF="motif5RV.logo.svg">reverse opposite</A></TD></TR> +</TABLE> +<H3>Matches to Known Motifs</H3> +<TABLE border="1" cellpading="0" cellspacing="0"> +<TR><TD> +<H4>SNRNP70K(RRM)/Drosophila_melanogaster-RNCMPT00143-PBM/HughesRNA</H4> +<TABLE><TR><TD> +<TABLE> +<TR><TD>Match Rank:</TD><TD>1</TD></TR> +<TR><TD>Score:</TD><TD>0.79</TD</TR> +<TR><TD>Offset:</TD><TD>-1</TD</TR> +<TR><TD>Orientation:</TD><TD>forward strand</TD></TR> +<TR><TD>Alignment:</TD><TD><FONT face="courier">-ATCAAGATGA</FONT><BR><FONT face="courier">GATCAAGA---</FONT></TD></TR></TABLE> +</TD><TD> +<svg width="280" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.25,2,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.25,0,36.5)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.25,0,24)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.25,1,11.5)">T</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,27,34)">A</text> + + <text fill="#00BB00" x="0" 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