Mercurial > repos > iuc > homer_gtf_to_annotations

annotate test-data/CTCF_peaks_second.txt @ 4:df55927535ed draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:02:25 +0000
parents 8ebb6520eef4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1 PeakID (cmd=annotatePeaks.pl test-data/CTCF_peaks.bed none -ann test-data/annotations_default.txt) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
2 chr10:96213797-96214300 chr10 96214053 96214053 + 26.3993 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
3 chr2:75055077-75055687 chr2 75055370 75055370 - 25.0987 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
4 chr10:95550458-95550913 chr10 95550658 95550658 + 22.4312 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
5 chr10:97345244-97345845 chr10 97345535 97345535 + 21.9543 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
6 chr2:75150910-75151415 chr2 75151178 75151178 - 21.6232 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
7 chr2:74300183-74300724 chr2 74300455 74300455 + 21.3163 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
8 chr2:75208163-75208613 chr2 75208426 75208426 - 20.9151 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
9 chr10:96033562-96034101 chr10 96033868 96033868 - 20.0255 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
10 chr2:74964211-74964829 chr2 74964544 74964544 - 19.6671 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
11 chr2:74247519-74247926 chr2 74247702 74247702 - 19.6437 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
12 chr2:75152384-75152964 chr2 75152697 75152697 - 19.3701 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
13 chr2:73965501-73966069 chr2 73965797 73965797 + 18.8918 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
14 chr2:74715602-74716472 chr2 74715928 74715928 + 18.4944 NA promoter-TSS (ENSMUST00000145799) NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
15 chr2:75786025-75786608 chr2 75786286 75786286 + 17.3776 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
16 chr10:97375737-97376277 chr10 97375993 97375993 + 17.1427 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
17 chr2:74027638-74028176 chr2 74027928 74027928 + 17.1136 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
18 chr10:97712528-97713193 chr10 97712887 97712887 + 16.5834 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
19 chr2:73868052-73868532 chr2 73868303 73868303 - 16.5297 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
20 chr2:74702109-74702707 chr2 74702402 74702402 + 16.3674 NA TTS (ENSMUST00000132326) NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
21 chr10:97312750-97313424 chr10 97313144 97313144 - 16.1617 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
22 chr2:75318086-75318603 chr2 75318399 75318399 - 15.8984 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
23 chr10:95557210-95557760 chr10 95557477 95557477 + 15.8474 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
24 chr2:75590116-75590691 chr2 75590418 75590418 - 15.844 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
25 chr2:73745562-73746116 chr2 73745859 73745859 - 15.583 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
26 chr2:74305723-74306142 chr2 74305973 74305973 - 15.4325 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
27 chr10:97670243-97670641 chr10 97670412 97670412 - 15.0213 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
28 chr2:75137844-75138351 chr2 75138096 75138096 - 14.9999 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
29 chr10:95894657-95895156 chr10 95894942 95894942 - 14.5144 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
30 chr10:96131980-96132540 chr10 96132306 96132306 + 14.3011 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
31 chr2:75588511-75588998 chr2 75588783 75588783 - 13.9441 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
32 chr2:75312148-75312690 chr2 75312440 75312440 - 12.976 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
33 chr10:96104999-96105605 chr10 96105360 96105360 - 12.8558 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
34 chr10:95898384-95898961 chr10 95898657 95898657 + 12.5406 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
35 chr10:97704497-97705056 chr10 97704767 97704767 - 12.2858 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
36 chr2:73947347-73947809 chr2 73947568 73947568 - 11.7 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
37 chr2:74672881-74673432 chr2 74673183 74673183 - 11.6759 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
38 chr2:75603091-75603554 chr2 75603330 75603330 - 11.5679 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
39 chr2:75605600-75606199 chr2 75605892 75605892 + 11.5138 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
40 chr2:73792224-73792669 chr2 73792431 73792431 + 11.3969 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
41 chr2:74655214-74655823 chr2 74655532 74655532 - 11.0865 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
42 chr2:74691505-74692018 chr2 74691770 74691770 + 10.8344 NA promoter-TSS (ENSMUST00000061745) NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
43 chr10:96934538-96935160 chr10 96934834 96934834 - 10.7794 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
44 chr2:75781071-75781581 chr2 75781340 75781340 - 10.7504 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
45 chr10:96182221-96182632 chr10 96182452 96182452 + 9.96549 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
46 chr10:95551647-95552156 chr10 95551884 95551884 + 9.8358 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
47 chr10:95489648-95490124 chr10 95489849 95489849 + 9.37574 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
48 chr10:97160138-97160734 chr10 97160697 97160697 - 9.26797 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
49 chr10:95858061-95858620 chr10 95858374 95858374 - 8.91987 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
50 chr10:97339748-97340355 chr10 97340070 97340070 - 8.23779 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
51 chr2:74686220-74686785 chr2 74686487 74686487 + 8.18583 NA exon (ENSMUST00000048086, exon 2 of 2) NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
52 chr10:96618332-96618740 chr10 96618519 96618519 + 7.7811 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
53 chr2:75563556-75564002 chr2 75563786 75563786 - 6.81984 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
54 chr2:73924997-73925519 chr2 73925251 73925251 + 6.64944 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
55 chr2:74977360-74977813 chr2 74977549 74977549 + 6.64332 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
56 chr2:74693923-74694529 chr2 74694234 74694234 - 6.49186 NA TTS (ENSMUST00000136302) NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
57 chr2:75515254-75515778 chr2 75515511 75515511 - 6.45021 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
58 chr2:74661581-74662231 chr2 74661784 74661784 - 6.32635 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
59 chr10:97689400-97689842 chr10 97689621 97689621 - 6.20282 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
60 chr10:96080279-96080903 chr10 96080635 96080635 - 6.11901 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
61 chr2:73987054-73987519 chr2 73987359 73987359 - 5.75056 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
62 chr2:74663455-74664030 chr2 74663752 74663752 - 5.5749 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
63 chr10:96616623-96617093 chr10 96616855 96616855 - 4.72295 NA NA NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
64 chr2:73998449-73999023 chr2 73998749 73998749 - 4.45417 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
65 chr2:74066544-74067106 chr2 74066831 74066831 + 4.26306 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
66 chr2:75658517-75658909 chr2 75658765 75658765 + 0.26272 NA Intergenic NA NA NA
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
67 chr10:97768293-97768873 chr10 97768454 97768454 + -1.29559 NA NA NA NA NA