Mercurial > repos > iuc > homer_gtf_to_annotations

comparison tool_data_table_conf.xml.test @ 3:7c5da353e460 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
author iuc
date Thu, 06 Apr 2023 16:23:06 +0000
parents 8ebb6520eef4
children
comparison
equal deleted inserted replaced
2:396cf2c12173 3:7c5da353e460
1 <tables> 1 <tables>
2 <!-- Locations of preparsed genomes --> 2 <!-- Locations of preparsed genomes -->
3 <table name="homer_preparse" comment_char="#"> 3 <table name="homer_preparse" comment_char="#">
4 <columns>value, dbkey, mask, size, name, path, path_fasta, version</columns> 4 <columns>value, dbkey, mask, size, name, path, path_fasta, version</columns>
5 <file path="${__HERE__}/test-data/homer_preparse.loc" /> 5 <file path="${__HERE__}/test-data/homer_preparse.loc"/>
6 </table> 6 </table>
7 <!-- Locations of all fasta files under genome directory --> 7 <!-- Locations of all fasta files under genome directory -->
8 <table name="all_fasta" comment_char="#"> 8 <table name="all_fasta" comment_char="#">
9 <columns>value, dbkey, name, path</columns> 9 <columns>value, dbkey, name, path</columns>
10 <file path="${__HERE__}/test-data/all_fasta.loc" /> 10 <file path="${__HERE__}/test-data/all_fasta.loc"/>
11 </table>
12 <!-- Built-in homer promoter and ID DBs (dir of <env>/share/data, 1 per organism) -->
13 <table name="homer_promoters" comment_char="#">
14 <columns>value, dbkey, organism, path, organism_version, promoter_version</columns>
15 <file path="${__HERE__}/test-data/homer_promoters.loc"/>
11 </table> 16 </table>
12 </tables> 17 </tables>