Mercurial > repos > iuc > homer_gtf_to_annotations
comparison test-data/CTCF_peaks_first.txt @ 0:8ebb6520eef4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
|---|---|
| date | Sun, 08 Aug 2021 11:04:17 +0000 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:8ebb6520eef4 |
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| 1 PeakID (cmd=annotatePeaks.pl test-data/CTCF_peaks.bed none -gtf test-data/small_simplified.gtf -ann test-data/annotations_default_simplified.txt) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type | |
| 2 chr10:96213797-96214300 chr10 96214053 96214053 + 26.3993 NA NA NA NA NA | |
| 3 chr2:75055077-75055687 chr2 75055370 75055370 - 25.0987 NA Intergenic NA -339374 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 4 chr10:95550458-95550913 chr10 95550658 95550658 + 22.4312 NA NA NA NA NA | |
| 5 chr10:97345244-97345845 chr10 97345535 97345535 + 21.9543 NA NA NA NA NA | |
| 6 chr2:75150910-75151415 chr2 75151178 75151178 - 21.6232 NA Intergenic NA -435182 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 7 chr2:74300183-74300724 chr2 74300455 74300455 + 21.3163 NA Intergenic NA -367855 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 8 chr2:75208163-75208613 chr2 75208426 75208426 - 20.9151 NA Intergenic NA -492430 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 9 chr10:96033562-96034101 chr10 96033868 96033868 - 20.0255 NA NA NA NA NA | |
| 10 chr2:74964211-74964829 chr2 74964544 74964544 - 19.6671 NA Intergenic NA -248548 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 11 chr2:74247519-74247926 chr2 74247702 74247702 - 19.6437 NA Intergenic NA -420608 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 12 chr2:75152384-75152964 chr2 75152697 75152697 - 19.3701 NA Intergenic NA -436701 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 13 chr2:73965501-73966069 chr2 73965797 73965797 + 18.8918 NA Intergenic NA -702513 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 14 chr2:74715602-74716472 chr2 74715928 74715928 + 18.4944 NA promoter-TSS (ENSMUST00000145799) NA 68 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 15 chr2:75786025-75786608 chr2 75786286 75786286 + 17.3776 NA Intergenic NA -1070290 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 16 chr10:97375737-97376277 chr10 97375993 97375993 + 17.1427 NA NA NA NA NA | |
| 17 chr2:74027638-74028176 chr2 74027928 74027928 + 17.1136 NA Intergenic NA -640382 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 18 chr10:97712528-97713193 chr10 97712887 97712887 + 16.5834 NA NA NA NA NA | |
| 19 chr2:73868052-73868532 chr2 73868303 73868303 - 16.5297 NA Intergenic NA -800007 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 20 chr2:74702109-74702707 chr2 74702402 74702402 + 16.3674 NA Intergenic NA -1260 ENSMUST00000198895 ENSMUSG00000104570 ENSMUST00000198895 Gm44463 miRNA | |
| 21 chr10:97312750-97313424 chr10 97313144 97313144 - 16.1617 NA NA NA NA NA | |
| 22 chr2:75318086-75318603 chr2 75318399 75318399 - 15.8984 NA Intergenic NA -602403 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 23 chr10:95557210-95557760 chr10 95557477 95557477 + 15.8474 NA NA NA NA NA | |
| 24 chr2:75590116-75590691 chr2 75590418 75590418 - 15.844 NA Intergenic NA -874422 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 25 chr2:73745562-73746116 chr2 73745859 73745859 - 15.583 NA Intergenic NA -922451 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 26 chr2:74305723-74306142 chr2 74305973 74305973 - 15.4325 NA Intergenic NA -362337 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 27 chr10:97670243-97670641 chr10 97670412 97670412 - 15.0213 NA NA NA NA NA | |
| 28 chr2:75137844-75138351 chr2 75138096 75138096 - 14.9999 NA Intergenic NA -422100 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 29 chr10:95894657-95895156 chr10 95894942 95894942 - 14.5144 NA NA NA NA NA | |
| 30 chr10:96131980-96132540 chr10 96132306 96132306 + 14.3011 NA NA NA NA NA | |
| 31 chr2:75588511-75588998 chr2 75588783 75588783 - 13.9441 NA Intergenic NA -872787 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 32 chr2:75312148-75312690 chr2 75312440 75312440 - 12.976 NA Intergenic NA -596444 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 33 chr10:96104999-96105605 chr10 96105360 96105360 - 12.8558 NA NA NA NA NA | |
| 34 chr10:95898384-95898961 chr10 95898657 95898657 + 12.5406 NA NA NA NA NA | |
| 35 chr10:97704497-97705056 chr10 97704767 97704767 - 12.2858 NA NA NA NA NA | |
| 36 chr2:73947347-73947809 chr2 73947568 73947568 - 11.7 NA Intergenic NA -720742 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 37 chr2:74672881-74673432 chr2 74673183 74673183 - 11.6759 NA Intergenic NA -1830 ENSMUST00000001878 ENSMUSG00000001823 ENSMUST00000001878 Hoxd12 protein_coding | |
| 38 chr2:75603091-75603554 chr2 75603330 75603330 - 11.5679 NA Intergenic NA -887334 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 39 chr2:75605600-75606199 chr2 75605892 75605892 + 11.5138 NA Intergenic NA -889896 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 40 chr2:73792224-73792669 chr2 73792431 73792431 + 11.3969 NA Intergenic NA -875879 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 41 chr2:74655214-74655823 chr2 74655532 74655532 - 11.0865 NA Intergenic NA -12778 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 42 chr2:74691505-74692018 chr2 74691770 74691770 + 10.8344 NA promoter-TSS (ENSMUST00000061745) NA -154 ENSMUST00000061745 ENSMUSG00000050368 ENSMUST00000061745 Hoxd10 protein_coding | |
| 43 chr10:96934538-96935160 chr10 96934834 96934834 - 10.7794 NA NA NA NA NA | |
| 44 chr2:75781071-75781581 chr2 75781340 75781340 - 10.7504 NA Intergenic NA -1065344 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 45 chr10:96182221-96182632 chr10 96182452 96182452 + 9.96549 NA NA NA NA NA | |
| 46 chr10:95551647-95552156 chr10 95551884 95551884 + 9.8358 NA NA NA NA NA | |
| 47 chr10:95489648-95490124 chr10 95489849 95489849 + 9.37574 NA NA NA NA NA | |
| 48 chr10:97160138-97160734 chr10 97160697 97160697 - 9.26797 NA NA NA NA NA | |
| 49 chr10:95858061-95858620 chr10 95858374 95858374 - 8.91987 NA NA NA NA NA | |
| 50 chr10:97339748-97340355 chr10 97340070 97340070 - 8.23779 NA NA NA NA NA | |
| 51 chr2:74686220-74686785 chr2 74686487 74686487 + 8.18583 NA exon (ENSMUST00000048086, exon 2 of 2) NA 3041 ENSMUST00000136302 ENSMUSG00000099521 ENSMUST00000136302 Gm28309 processed_transcript | |
| 52 chr10:96618332-96618740 chr10 96618519 96618519 + 7.7811 NA NA NA NA NA | |
| 53 chr2:75563556-75564002 chr2 75563786 75563786 - 6.81984 NA Intergenic NA -847790 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 54 chr2:73924997-73925519 chr2 73925251 73925251 + 6.64944 NA Intergenic NA -743059 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 55 chr2:74977360-74977813 chr2 74977549 74977549 + 6.64332 NA Intergenic NA -261553 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 56 chr2:74693923-74694529 chr2 74694234 74694234 - 6.49186 NA TTS (ENSMUST00000136302) NA -1286 ENSMUST00000126966 ENSMUSG00000086077 ENSMUST00000126966 Gm14396 lincRNA | |
| 57 chr2:75515254-75515778 chr2 75515511 75515511 - 6.45021 NA Intergenic NA -799515 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 58 chr2:74661581-74662231 chr2 74661784 74661784 - 6.32635 NA Intergenic NA -6526 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 59 chr10:97689400-97689842 chr10 97689621 97689621 - 6.20282 NA NA NA NA NA | |
| 60 chr10:96080279-96080903 chr10 96080635 96080635 - 6.11901 NA NA NA NA NA | |
| 61 chr2:73987054-73987519 chr2 73987359 73987359 - 5.75056 NA Intergenic NA -680951 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 62 chr2:74663455-74664030 chr2 74663752 74663752 - 5.5749 NA Intergenic NA -4558 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 63 chr10:96616623-96617093 chr10 96616855 96616855 - 4.72295 NA NA NA NA NA | |
| 64 chr2:73998449-73999023 chr2 73998749 73998749 - 4.45417 NA Intergenic NA -669561 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 65 chr2:74066544-74067106 chr2 74066831 74066831 + 4.26306 NA Intergenic NA -601479 ENSMUST00000001872 ENSMUSG00000001819 ENSMUST00000001872 Hoxd13 protein_coding | |
| 66 chr2:75658517-75658909 chr2 75658765 75658765 + 0.26272 NA Intergenic NA -942769 ENSMUST00000145799 ENSMUSG00000052371 ENSMUST00000145799 Hoxd3os1 antisense | |
| 67 chr10:97768293-97768873 chr10 97768454 97768454 + -1.29559 NA NA NA NA NA |