Mercurial > repos > iuc > homer_gtf_to_annotations

comparison test-data/annotations_default.txt @ 0:8ebb6520eef4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:04:17 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:8ebb6520eef4
1 Intergenic chr2 1 74667309 + N 1900000000
2 promoter-TSS (ENSMUST00000001872) chr2 74667310 74668410 + P 1
3 exon (ENSMUST00000001872, exon 1 of 2) chr2 74668411 74669078 + E 59
4 intron (ENSMUST00000001872, intron 1 of 1) chr2 74669079 74669885 + I 158
5 exon (ENSMUST00000001872, exon 2 of 2) chr2 74669886 74670136 + E 61
6 3' UTR (ENSMUST00000001872, exon 2 of 2) chr2 74670137 74671498 + 3UTR 60
7 TTS (ENSMUST00000001872) chr2 74671499 74672599 + TTS 30
8 Intergenic--2 chr2 74672600 74674012 + N 1900000000
9 promoter-TSS (ENSMUST00000001878) chr2 74674013 74675113 + P 2
10 exon (ENSMUST00000001878, exon 1 of 2) chr2 74675114 74675654 + E 63
11 intron (ENSMUST00000001878, intron 1 of 1) chr2 74675655 74675813 + I 158
12 exon (ENSMUST00000001878, exon 2 of 2) chr2 74675814 74676052 + E 65
13 3' UTR (ENSMUST00000001878, exon 2 of 2) chr2 74676053 74677604 + 3UTR 64
14 TTS (ENSMUST00000001878) chr2 74677605 74678556 + TTS 31
15 promoter-TSS (ENSMUST00000048086) chr2 74678557 74679657 + P 6
16 exon (ENSMUST00000048086, exon 1 of 2) chr2 74679658 74679809 + E 83
17 intron (ENSMUST00000048086, intron 1 of 1) chr2 74679810 74681322 + I 158
18 promoter-TSS (ENSMUST00000142312) chr2 74681323 74682423 + P 20
19 exon (ENSMUST00000142312, exon 1 of 2) chr2 74682424 74682445 + E 131
20 promoter-TSS (ENSMUST00000136302) chr2 74682446 74683546 + P 17
21 intron (ENSMUST00000136302, intron 1 of 2) chr2 74683547 74683902 + I 158
22 exon (ENSMUST00000048086, exon 2 of 2) chr2 74683903 74684067 + E 84
23 TTS (ENSMUST00000142312) chr2 74684068 74685168 + TTS 49
24 intron (ENSMUST00000136302, intron 2 of 2) chr2 74684357 74685168 + I 158
25 exon (ENSMUST00000048086, exon 2 of 2)--2 chr2 74685169 74686915 + E 84
26 TTS (ENSMUST00000048086) chr2 74686916 74688016 + TTS 35
27 intron (ENSMUST00000136302, intron 2 of 2)--2 chr2 74688017 74690923 + I 158
28 promoter-TSS (ENSMUST00000061745) chr2 74690924 74692024 + P 9
29 exon (ENSMUST00000061745, exon 1 of 2) chr2 74692025 74692724 + E 96
30 intron (ENSMUST00000061745, intron 1 of 1) chr2 74692725 74694090 + I 158
31 exon (ENSMUST00000061745, exon 2 of 2) chr2 74694091 74694093 + E 98
32 TTS (ENSMUST00000136302) chr2 74694094 74694519 + TTS 46
33 promoter-TSS (ENSMUST00000126966) chr2 74694520 74695620 + P 15
34 promoter-TSS (ENSMUST00000152027) chr2 74695621 74695701 + P 25
35 TTS (ENSMUST00000061745) chr2 74695702 74696105 + TTS 38
36 TTS (ENSMUST00000190845) chr2 74696106 74696726 - TTS 57
37 promoter-TSS (ENSMUST00000059272) chr2 74696727 74697827 + P 8
38 promoter-TSS (ENSMUST00000190845) chr2 74697828 74698586 - P 28
39 exon (ENSMUST00000059272, exon 1 of 2) chr2 74698587 74698833 + E 92
40 intron (ENSMUST00000059272, intron 1 of 1) chr2 74698834 74699179 + I 158
41 exon (ENSMUST00000059272, exon 2 of 2) chr2 74699180 74699421 + E 94
42 3' UTR (ENSMUST00000059272, exon 2 of 2) chr2 74699422 74700005 + 3UTR 93
43 TTS (ENSMUST00000198895) chr2 74700006 74700107 - TTS 58
44 TTS (ENSMUST00000059272) chr2 74700108 74701041 + TTS 37
45 promoter-TSS (ENSMUST00000198895) chr2 74701042 74702142 - P 29
46 Intergenic--3 chr2 74702143 74702247 + N 1900000000
47 TTS (ENSMUST00000132326) chr2 74702248 74703348 - TTS 45
48 exon (ENSMUST00000132326, exon 2 of 2) chr2 74703349 74703614 - E 120
49 promoter-TSS (ENSMUST00000151380) chr2 74703615 74703904 + P 24
50 promoter-TSS (ENSMUST00000019749) chr2 74703905 74705005 + P 3
51 promoter-TSS (ENSMUST00000074721) chr2 74705006 74705252 + P 10
52 5' UTR (ENSMUST00000019749, exon 1 of 2) chr2 74705253 74705547 + 5UTR 66
53 exon (ENSMUST00000019749, exon 1 of 2) chr2 74705548 74706118 + E 67
54 intron (ENSMUST00000074721, intron 1 of 1) chr2 74706119 74706513 + I 158
55 exon (ENSMUST00000019749, exon 2 of 2) chr2 74706514 74706711 + E 69
56 TTS (ENSMUST00000151380) chr2 74706712 74707206 + TTS 53
57 TTS (ENSMUST00000074721) chr2 74707207 74707832 + TTS 39
58 TTS (ENSMUST00000019749) chr2 74707833 74708933 + TTS 32
59 intron (ENSMUST00000132326, intron 1 of 1) chr2 74708934 74709042 - I 158
60 TTS (ENSMUST00000156342) chr2 74709043 74709192 - TTS 55
61 TTS (ENSMUST00000145799) chr2 74709193 74710293 - TTS 52
62 intron (ENSMUST00000145799, intron 2 of 2) chr2 74710294 74710926 - I 158
63 promoter-TSS (ENSMUST00000111983) chr2 74710927 74712027 + P 14
64 promoter-TSS (ENSMUST00000132326) chr2 74712028 74713054 - P 16
65 promoter-TSS (ENSMUST00000156342) chr2 74713055 74713526 - P 26
66 exon (ENSMUST00000139005, exon 2 of 2) chr2 74713527 74714401 - E 125
67 intron (ENSMUST00000145799, intron 1 of 2) chr2 74714402 74715705 - I 158
68 exon (ENSMUST00000139005, exon 1 of 2) chr2 74715706 74715895 - E 126
69 promoter-TSS (ENSMUST00000145799) chr2 74715896 74716029 - P 23
70 promoter-TSS (ENSMUST00000139005) chr2 74716030 74717130 - P 18
71 intron (ENSMUST00000111983, intron 1 of 2) chr2 74717131 74720977 + I 158
72 promoter-TSS (ENSMUST00000047904) chr2 74720978 74722078 + P 5
73 5' UTR (ENSMUST00000047904, exon 1 of 6) chr2 74722079 74722177 + 5UTR 75
74 intron (ENSMUST00000047904, intron 1 of 5) chr2 74722178 74722552 + I 158
75 5' UTR (ENSMUST00000047904, exon 2 of 6) chr2 74722553 74722631 + 5UTR 76
76 intron (ENSMUST00000144040, intron 2 of 6) chr2 74722632 74723331 + I 158
77 5' UTR (ENSMUST00000047904, exon 3 of 6) chr2 74723332 74723367 + 5UTR 77
78 intron (ENSMUST00000144040, intron 3 of 6) chr2 74723368 74725069 + I 158
79 promoter-TSS (ENSMUST00000083566) chr2 74725070 74725727 + P 11
80 promoter-TSS (ENSMUST00000053932) chr2 74725728 74726828 + P 7
81 promoter-TSS (ENSMUST00000111980) chr2 74726829 74727174 + P 12
82 5' UTR (ENSMUST00000047904, exon 5 of 6) chr2 74727175 74727278 + 5UTR 79
83 exon (ENSMUST00000047904, exon 5 of 6) chr2 74727279 74727705 + E 80
84 intron (ENSMUST00000053932, intron 1 of 3) chr2 74727706 74728261 + I 158
85 exon (ENSMUST00000047904, exon 6 of 6) chr2 74728262 74728587 + E 82
86 3' UTR (ENSMUST00000047904, exon 6 of 6) chr2 74728588 74728767 + 3UTR 81
87 TTS (ENSMUST00000144040) chr2 74728768 74729022 + TTS 50
88 TTS (ENSMUST00000111980) chr2 74729023 74729059 + TTS 41
89 TTS (ENSMUST00000047904) chr2 74729060 74730160 + TTS 34
90 intron (ENSMUST00000053932, intron 2 of 3) chr2 74730161 74731912 + I 158
91 promoter-TSS (ENSMUST00000144544) chr2 74731913 74733013 + P 22
92 5' UTR (ENSMUST00000144544, exon 1 of 2) chr2 74733014 74733040 + 5UTR 141
93 intron (ENSMUST00000144544, intron 1 of 1) chr2 74733041 74735514 + I 158
94 promoter-TSS (ENSMUST00000111982) chr2 74735515 74736615 + P 13
95 5' UTR (ENSMUST00000111982, exon 1 of 3) chr2 74736616 74736705 + 5UTR 108
96 intron (ENSMUST00000111982, intron 1 of 2) chr2 74736706 74738618 + I 158
97 promoter-TSS (ENSMUST00000047830) chr2 74738619 74739719 + P 4
98 intron (ENSMUST00000047830, intron 1 of 2) chr2 74739720 74743927 + I 158
99 5' UTR (ENSMUST00000047830, exon 2 of 3) chr2 74743928 74744011 + 5UTR 71
100 exon (ENSMUST00000047830, exon 2 of 3) chr2 74744012 74744113 + E 72
101 TTS (ENSMUST00000144544) chr2 74744114 74744673 + TTS 51
102 promoter-TSS (ENSMUST00000140666) chr2 74744674 74745774 + P 19
103 promoter-TSS (ENSMUST00000190553) chr2 74745775 74745822 + P 27
104 5' UTR (ENSMUST00000140666, exon 1 of 2) chr2 74745823 74746156 + 5UTR 127
105 exon (ENSMUST00000140666, exon 1 of 2) chr2 74746157 74746220 + E 128
106 exon (ENSMUST00000190553, exon 1 of 1) chr2 74746221 74746321 + E 155
107 exon (ENSMUST00000047830, exon 3 of 3) chr2 74746322 74746495 + E 74
108 TTS (ENSMUST00000140666) chr2 74746496 74747596 + TTS 48
109 3' UTR (ENSMUST00000111983, exon 3 of 3) chr2 74747080 74747799 + 3UTR 116
110 3' UTR (ENSMUST00000047830, exon 3 of 3) chr2 74747597 74747799 + 3UTR 73
111 TTS (ENSMUST00000047830) chr2 74747800 74748900 + TTS 33
112 TTS (ENSMUST00000053932) chr2 74748901 74748918 + TTS 36
113 TTS (ENSMUST00000111983) chr2 74748919 74749271 + TTS 43
114 TTS (ENSMUST00000190553) chr2 74749272 74749442 + TTS 56
115 Intergenic--4 chr2 74749443 1500000000 + N 1900000000