Mercurial > repos > iuc > homer_gtf_to_annotations

comparison test-data/annotations_exon_start.txt @ 0:8ebb6520eef4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:04:17 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:8ebb6520eef4
1 Intergenic chr2 1 74667309 + N 1900000000
2 promoter-TSS (ENSMUST00000001872) chr2 74667310 74668410 + P 1
3 exon (ENSMUST00000001872, exon 1 of 2) chr2 74668411 74669078 + E 59
4 intron (ENSMUST00000001872, intron 1 of 1) chr2 74669079 74669885 + I 145
5 exon (ENSMUST00000001872, exon 2 of 2) chr2 74669886 74671498 + E 60
6 TTS (ENSMUST00000001872) chr2 74671499 74672599 + TTS 30
7 Intergenic--2 chr2 74672600 74674012 + N 1900000000
8 promoter-TSS (ENSMUST00000001878) chr2 74674013 74675113 + P 2
9 exon (ENSMUST00000001878, exon 1 of 2) chr2 74675114 74675654 + E 62
10 intron (ENSMUST00000001878, intron 1 of 1) chr2 74675655 74675813 + I 145
11 exon (ENSMUST00000001878, exon 2 of 2) chr2 74675814 74677604 + E 63
12 TTS (ENSMUST00000001878) chr2 74677605 74678556 + TTS 31
13 promoter-TSS (ENSMUST00000048086) chr2 74678557 74679657 + P 6
14 exon (ENSMUST00000048086, exon 1 of 2) chr2 74679658 74679809 + E 78
15 intron (ENSMUST00000048086, intron 1 of 1) chr2 74679810 74681322 + I 145
16 promoter-TSS (ENSMUST00000142312) chr2 74681323 74682423 + P 20
17 exon (ENSMUST00000142312, exon 1 of 2) chr2 74682424 74682445 + E 119
18 promoter-TSS (ENSMUST00000136302) chr2 74682446 74683546 + P 17
19 intron (ENSMUST00000136302, intron 1 of 2) chr2 74683547 74683902 + I 145
20 exon (ENSMUST00000048086, exon 2 of 2) chr2 74683903 74684067 + E 79
21 TTS (ENSMUST00000142312) chr2 74684068 74685168 + TTS 49
22 intron (ENSMUST00000136302, intron 2 of 2) chr2 74684357 74685168 + I 145
23 exon (ENSMUST00000048086, exon 2 of 2)--2 chr2 74685169 74686915 + E 79
24 TTS (ENSMUST00000048086) chr2 74686916 74688016 + TTS 35
25 intron (ENSMUST00000136302, intron 2 of 2)--2 chr2 74688017 74690923 + I 145
26 promoter-TSS (ENSMUST00000061745) chr2 74690924 74692024 + P 9
27 exon (ENSMUST00000061745, exon 1 of 2) chr2 74692025 74692724 + E 89
28 intron (ENSMUST00000061745, intron 1 of 1) chr2 74692725 74694090 + I 145
29 exon (ENSMUST00000061745, exon 2 of 2) chr2 74694091 74694093 + E 90
30 TTS (ENSMUST00000136302) chr2 74694094 74694519 + TTS 46
31 promoter-TSS (ENSMUST00000126966) chr2 74694520 74695620 + P 15
32 promoter-TSS (ENSMUST00000152027) chr2 74695621 74695701 + P 25
33 TTS (ENSMUST00000061745) chr2 74695702 74696105 + TTS 38
34 TTS (ENSMUST00000190845) chr2 74696106 74696726 - TTS 57
35 promoter-TSS (ENSMUST00000059272) chr2 74696727 74697827 + P 8
36 promoter-TSS (ENSMUST00000190845) chr2 74697828 74698586 - P 28
37 exon (ENSMUST00000059272, exon 1 of 2) chr2 74698587 74698833 + E 86
38 intron (ENSMUST00000059272, intron 1 of 1) chr2 74698834 74699179 + I 145
39 exon (ENSMUST00000059272, exon 2 of 2) chr2 74699180 74700005 + E 87
40 TTS (ENSMUST00000198895) chr2 74700006 74700107 - TTS 58
41 TTS (ENSMUST00000059272) chr2 74700108 74701041 + TTS 37
42 promoter-TSS (ENSMUST00000198895) chr2 74701042 74702142 - P 29
43 Intergenic--3 chr2 74702143 74702247 + N 1900000000
44 TTS (ENSMUST00000132326) chr2 74702248 74703348 - TTS 45
45 exon (ENSMUST00000132326, exon 2 of 2) chr2 74703349 74703614 - E 108
46 promoter-TSS (ENSMUST00000151380) chr2 74703615 74703904 + P 24
47 promoter-TSS (ENSMUST00000019749) chr2 74703905 74705005 + P 3
48 promoter-TSS (ENSMUST00000074721) chr2 74705006 74705252 + P 10
49 5' UTR (ENSMUST00000019749, exon 1 of 2) chr2 74705253 74705547 + 5UTR 64
50 exon (ENSMUST00000019749, exon 1 of 2) chr2 74705548 74706118 + E 65
51 intron (ENSMUST00000074721, intron 1 of 1) chr2 74706119 74706513 + I 145
52 exon (ENSMUST00000019749, exon 2 of 2) chr2 74706514 74706711 + E 66
53 TTS (ENSMUST00000151380) chr2 74706712 74707206 + TTS 53
54 TTS (ENSMUST00000074721) chr2 74707207 74707832 + TTS 39
55 TTS (ENSMUST00000019749) chr2 74707833 74708933 + TTS 32
56 intron (ENSMUST00000132326, intron 1 of 1) chr2 74708934 74709042 - I 145
57 TTS (ENSMUST00000156342) chr2 74709043 74709192 - TTS 55
58 TTS (ENSMUST00000145799) chr2 74709193 74710293 - TTS 52
59 intron (ENSMUST00000145799, intron 2 of 2) chr2 74710294 74710926 - I 145
60 promoter-TSS (ENSMUST00000111983) chr2 74710927 74712027 + P 14
61 promoter-TSS (ENSMUST00000132326) chr2 74712028 74713054 - P 16
62 promoter-TSS (ENSMUST00000156342) chr2 74713055 74713526 - P 26
63 exon (ENSMUST00000139005, exon 2 of 2) chr2 74713527 74714401 - E 113
64 intron (ENSMUST00000145799, intron 1 of 2) chr2 74714402 74715705 - I 145
65 exon (ENSMUST00000139005, exon 1 of 2) chr2 74715706 74715895 - E 114
66 promoter-TSS (ENSMUST00000145799) chr2 74715896 74716029 - P 23
67 promoter-TSS (ENSMUST00000139005) chr2 74716030 74717130 - P 18
68 intron (ENSMUST00000111983, intron 1 of 2) chr2 74717131 74720977 + I 145
69 promoter-TSS (ENSMUST00000047904) chr2 74720978 74722078 + P 5
70 5' UTR (ENSMUST00000047904, exon 1 of 6) chr2 74722079 74722177 + 5UTR 71
71 intron (ENSMUST00000047904, intron 1 of 5) chr2 74722178 74722552 + I 145
72 5' UTR (ENSMUST00000047904, exon 2 of 6) chr2 74722553 74722631 + 5UTR 72
73 intron (ENSMUST00000144040, intron 2 of 6) chr2 74722632 74723331 + I 145
74 5' UTR (ENSMUST00000047904, exon 3 of 6) chr2 74723332 74723367 + 5UTR 73
75 intron (ENSMUST00000144040, intron 3 of 6) chr2 74723368 74725069 + I 145
76 promoter-TSS (ENSMUST00000083566) chr2 74725070 74725727 + P 11
77 promoter-TSS (ENSMUST00000053932) chr2 74725728 74726828 + P 7
78 promoter-TSS (ENSMUST00000111980) chr2 74726829 74727174 + P 12
79 5' UTR (ENSMUST00000047904, exon 5 of 6) chr2 74727175 74727278 + 5UTR 75
80 exon (ENSMUST00000047904, exon 5 of 6) chr2 74727279 74727705 + E 76
81 intron (ENSMUST00000053932, intron 1 of 3) chr2 74727706 74728261 + I 145
82 exon (ENSMUST00000047904, exon 6 of 6) chr2 74728262 74728767 + E 77
83 TTS (ENSMUST00000144040) chr2 74728768 74729022 + TTS 50
84 TTS (ENSMUST00000111980) chr2 74729023 74729059 + TTS 41
85 TTS (ENSMUST00000047904) chr2 74729060 74730160 + TTS 34
86 intron (ENSMUST00000053932, intron 2 of 3) chr2 74730161 74731912 + I 145
87 promoter-TSS (ENSMUST00000144544) chr2 74731913 74733013 + P 22
88 5' UTR (ENSMUST00000144544, exon 1 of 2) chr2 74733014 74733040 + 5UTR 128
89 intron (ENSMUST00000144544, intron 1 of 1) chr2 74733041 74735514 + I 145
90 promoter-TSS (ENSMUST00000111982) chr2 74735515 74736615 + P 13
91 5' UTR (ENSMUST00000111982, exon 1 of 3) chr2 74736616 74736705 + 5UTR 98
92 intron (ENSMUST00000111982, intron 1 of 2) chr2 74736706 74738618 + I 145
93 promoter-TSS (ENSMUST00000047830) chr2 74738619 74739719 + P 4
94 intron (ENSMUST00000047830, intron 1 of 2) chr2 74739720 74743927 + I 145
95 5' UTR (ENSMUST00000047830, exon 2 of 3) chr2 74743928 74744011 + 5UTR 68
96 exon (ENSMUST00000047830, exon 2 of 3) chr2 74744012 74744113 + E 69
97 TTS (ENSMUST00000144544) chr2 74744114 74744673 + TTS 51
98 promoter-TSS (ENSMUST00000140666) chr2 74744674 74745774 + P 19
99 promoter-TSS (ENSMUST00000190553) chr2 74745775 74745822 + P 27
100 5' UTR (ENSMUST00000140666, exon 1 of 2) chr2 74745823 74746156 + 5UTR 115
101 exon (ENSMUST00000140666, exon 1 of 2) chr2 74746157 74746220 + E 116
102 exon (ENSMUST00000190553, exon 1 of 1) chr2 74746221 74746321 + E 142
103 exon (ENSMUST00000047830, exon 3 of 3) chr2 74746322 74746495 + E 70
104 TTS (ENSMUST00000140666) chr2 74746496 74747596 + TTS 48
105 exon (ENSMUST00000047830, exon 3 of 3)--2 chr2 74747597 74747799 + E 70
106 TTS (ENSMUST00000047830) chr2 74747800 74748900 + TTS 33
107 TTS (ENSMUST00000053932) chr2 74748901 74748918 + TTS 36
108 TTS (ENSMUST00000111983) chr2 74748919 74749271 + TTS 43
109 TTS (ENSMUST00000190553) chr2 74749272 74749442 + TTS 56
110 Intergenic--4 chr2 74749443 1500000000 + N 1900000000