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comparison test-data/motif_test1/homerResults/motif6.similar.html @ 0:8ebb6520eef4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:04:17 +0000
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1 <HTML><HEAD><TITLE>motif6</TITLE></HEAD>
2 <H2>Information for motif6</H2>
3 <svg width="255" height="50">
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54
55 </g>
56 </svg>
57 <BR/>
58 Reverse Opposite:<BR/><svg width="255" height="50">
59 <g font-family="Arial" font-weight="bold" font-size="66.5">
60 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
61 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text>
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63 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,1,34)">T</text>
64
65 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text>
66 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text>
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94
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99
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104
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109
110 </g>
111 </svg>
112 <BR/>
113 <TABLE border="1" cellpading="0" cellspacing="0">
114 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
115 <TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
116 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
117 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
118 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
119 <TR><TD>Number of Background Sequences with motif</TD><TD>219.9</TD></TR>
120 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.49%</TD></TR>
121 <TR><TD>Average Position of motif in Targets</TD><TD>140.0 +/- 0.0bp</TD></TR>
122 <TR><TD>Average Position of motif in Background</TD><TD>103.4 +/- 83.3bp</TD></TR>
123 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
124 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
125 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif6.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif6RV.motif">reverse opposite</A></TD></TR>
126 </TABLE>
127 <H3>Similar de novo motifs found</H3>
128 <TABLE border="1" cellpading="0" cellspacing="0">
129 <TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
130 <TR><TD>1</TD><TD>0.894</TD><TD><svg width="205" height="50">
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174
175 </TD><TD>1e-1</TD><TD>-2.897885</TD><TD>100.00%</TD><TD>5.53%</TD><TD><A target="_blank" HREF="motif6.similar1.motif">motif file (matrix)</A></TD></TR>
176 </TABLE>
177 <P></P>
178 </BODY></HTML>