Mercurial > repos > iuc > homer_gtf_to_annotations

comparison tool-data/homer_preparse.loc.sample @ 0:8ebb6520eef4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author iuc
date Sun, 08 Aug 2021 11:04:17 +0000
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-1:000000000000 0:8ebb6520eef4
1 # homer_preparse.loc.sample
2 # This is a *.loc.sample file distributed with Galaxy that enables tools
3 # to use a directory of indexed data files. This one is for Homer preparsed genomes.
4 # The file should include an one line entry for each index set.
5 # The path points to the "directory" for the set, not a specific file.
6 # It has six text columns seperated by TABS.
7 #
8 # <unique_preparse_id> <dbkey> <mask> <size> <display_name> <directory_path> <path_fasta> <version>
9 #
10 # So, for example, if you had phiX174 preparsed with 200bp stored in:
11 #
12 # /tmp/phix_200
13 #
14 # containing phiX174.fasta.200.* files, such as:
15 # -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.cgbins
16 # -rw-r--r-- 1 ldelisle ldelisle 249K Jul 9 10:14 phiX174.fasta.200.cgfreq
17 # -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.gcbins
18 # -rw-r--r-- 1 ldelisle ldelisle 169K Jul 9 10:14 phiX174.fasta.200.pos
19 # -rw-r--r-- 1 ldelisle ldelisle 955K Jul 9 10:14 phiX174.fasta.200.seq
20 #
21 # then the homer_preparse.loc entry could look like this:
22 #
23 # phiX174_200 phiX174 False 200 phiX174 (200bp) /tmp/phix_200 /tmp/phiX174.fasta 4.11
24 #
25 #