Mercurial > repos > iuc > homer_gtf_to_annotations

diff macros.xml @ 3:7c5da353e460 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
author iuc
date Thu, 06 Apr 2023 16:23:06 +0000
parents 396cf2c12173
children
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--- a/macros.xml	Mon Dec 13 15:15:14 2021 +0000
+++ b/macros.xml	Thu Apr 06 16:23:06 2023 +0000
@@ -4,7 +4,8 @@
     This is the HOMER version that introduced the preparsed structure expected
     by the current version. -->
     <token name="@IDX_VERSION@">4.11</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
+    <token name="@PROFILE@">20.05</token>
     <xml name="xrefs">
         <xrefs>
             <xref type="bio.tools">homer</xref>
@@ -12,7 +13,7 @@
     </xml>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="4.11">homer</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">homer</requirement>
         </requirements>
     </xml>
     <xml name="choose_center">
@@ -41,6 +42,15 @@
             </when>
         </conditional>
     </xml>
+    <xml name="geneid_input">
+        <param name="organism" type="select" label="What is the organism DB to be used?">
+            <options from_data_table="homer_promoters">
+                <filter type="sort_by" column="organism"/>
+                <validator type="no_options" message="No pre-installed organism DBs are available. Contact your galaxy administrator."/>
+            </options>
+        </param>
+        <param name="target_set" type="data" format="tabular" label="List of gene identifiers for the positive set"/>
+    </xml>
     <xml name="citation">
         <citations>
             <citation type="doi">10.1016/j.molcel.2010.05.004</citation>