Mercurial > repos > iuc > homer_gtf_to_annotations
diff test-data/demoDB/knownResults_fasta.html @ 3:7c5da353e460 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
| author | iuc |
|---|---|
| date | Thu, 06 Apr 2023 16:23:06 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/demoDB/knownResults_fasta.html Thu Apr 06 16:23:06 2023 +0000 @@ -0,0 +1,95 @@ +<HTML><HEAD><TITLE>./ - Homer Known Motif Enrichment Results</TITLE></HEAD> +<BODY> +<H1>Homer Known Motif Enrichment Results (./)</H1> +<A HREF="homerResults.html">Homer <i>de novo</i> Motif Results</A><BR/> +<A HREF="geneOntology.html">Gene Ontology Enrichment Results</A><BR/> +<A HREF="knownResults.txt">Known Motif Enrichment Results (txt file)</A><BR/> +Total Target Sequences = 15, Total Background Sequences = 68</BR> +<TABLE border="1" cellpading="0" cellspacing="0"> +<TR><TD>Rank</TD><TD>Motif</TD><TD>Name</TD><TD>P-value</TD><TD>log P-pvalue</TD><TD>q-value (Benjamini)</TD><TD># Target Sequences with Motif</TD><TD>% of Targets Sequences with Motif</TD><TD># Background Sequences with Motif</TD><TD>% of Background Sequences with Motif</TD><TD>Motif File</TD> +<TD>SVG</TD></TR> +<TR><TD>1</TD><TD> +<svg width="380" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.206,0,49)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.225,2,38.7)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.277,0,27.45)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.292,1,13.6)">T</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.206,25,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.219,25,38.7)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.271,27,27.75)">A</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.304,26,14.2)">T</text> + + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.213,51,49)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.218,50,38.35)">C</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.221,52,27.45)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.348,50,16.4)">G</text> + + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.164,75,49)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.218,77,40.8)">A</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.228,76,29.9)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.390,75,18.5)">C</text> + + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.061,100,49)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.120,102,45.95)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.234,100,39.95)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.585,101,28.25)">T</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.032,127,49)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.052,125,47.4)">G</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.207,125,44.8)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.709,126,34.45)">T</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.027,152,49)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.031,150,47.65)">G</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.058,150,46.1)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.884,151,43.2)">T</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.017,177,49)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.023,175,48.15)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.072,176,47)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.888,175,43.4)">C</text> + + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.012,200,49)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.025,202,48.4)">A</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.315,201,47.15)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.648,200,31.4)">C</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.009,225,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.025,225,48.55)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.343,226,47.3)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.623,227,30.15)">A</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.013,250,49)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.029,251,48.35)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.116,252,46.9)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.842,250,41.1)">G</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.033,275,49)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.035,276,47.35)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.065,277,45.6)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.867,275,42.35)">G</text> + + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.028,301,49)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.048,300,47.6)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.136,300,45.2)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.788,302,38.4)">A</text> + + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.039,326,49)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.041,325,47.05)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.053,325,45)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.867,327,42.35)">A</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.175,350,49)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.190,351,40.25)">T</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.222,350,30.75)">G</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.412,352,19.65)">A</text> + + </g> +</svg> + +</TD><TD>Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer</TD><TD>1e-2</TD><TD>-5.538e+00</TD><TD>1.0000</TD><TD>9.0</TD><TD>60.00%</TD><TD>14.0</TD><TD>20.59%</TD><TD><A target="_blank" HREF="knownResults//known1.motif">motif file (matrix)</A></TD> +<TD><A HREF="knownResults//known1.logo.svg">svg</A></TD> +</TR> +</TABLE></BODY></HTML>