Mercurial > repos > iuc > homer_gtf_to_annotations
diff test-data/annotations_small_TSSTTS.txt @ 0:8ebb6520eef4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
|---|---|
| date | Sun, 08 Aug 2021 11:04:17 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annotations_small_TSSTTS.txt Sun Aug 08 11:04:17 2021 +0000 @@ -0,0 +1,164 @@ +Intergenic chr2 1 74668259 + N 1900000000 +promoter-TSS (ENSMUST00000001872) chr2 74668260 74668360 + P 1 +exon (ENSMUST00000001872, exon 1 of 2) chr2 74668361 74669078 + E 59 +intron (ENSMUST00000001872, intron 1 of 1) chr2 74669079 74669885 + I 158 +exon (ENSMUST00000001872, exon 2 of 2) chr2 74669886 74670136 + E 61 +3' UTR (ENSMUST00000001872, exon 2 of 2) chr2 74670137 74671548 + 3UTR 60 +TTS (ENSMUST00000001872) chr2 74671549 74671649 + TTS 30 +Intergenic--2 chr2 74671650 74674962 + N 1900000000 +promoter-TSS (ENSMUST00000001878) chr2 74674963 74675063 + P 2 +5' UTR (ENSMUST00000001878, exon 1 of 2) chr2 74675064 74675086 + 5UTR 62 +exon (ENSMUST00000001878, exon 1 of 2) chr2 74675087 74675654 + E 63 +intron (ENSMUST00000001878, intron 1 of 1) chr2 74675655 74675813 + I 158 +exon (ENSMUST00000001878, exon 2 of 2) chr2 74675814 74676052 + E 65 +3' UTR (ENSMUST00000001878, exon 2 of 2) chr2 74676053 74677654 + 3UTR 64 +TTS (ENSMUST00000001878) chr2 74677655 74677755 + TTS 31 +Intergenic--3 chr2 74677756 74679506 + N 1900000000 +promoter-TSS (ENSMUST00000048086) chr2 74679507 74679607 + P 6 +exon (ENSMUST00000048086, exon 1 of 2) chr2 74679608 74679809 + E 83 +intron (ENSMUST00000048086, intron 1 of 1) chr2 74679810 74682272 + I 158 +promoter-TSS (ENSMUST00000142312) chr2 74682273 74682373 + P 20 +5' UTR (ENSMUST00000142312, exon 1 of 2) chr2 74682374 74682392 + 5UTR 130 +exon (ENSMUST00000142312, exon 1 of 2) chr2 74682393 74683167 + E 131 +intron (ENSMUST00000142312, intron 1 of 1) chr2 74683168 74683395 + I 158 +promoter-TSS (ENSMUST00000136302) chr2 74683396 74683496 + P 17 +exon (ENSMUST00000136302, exon 1 of 3) chr2 74683497 74683509 + E 122 +intron (ENSMUST00000136302, intron 1 of 2) chr2 74683510 74683902 + I 158 +exon (ENSMUST00000048086, exon 2 of 2) chr2 74683903 74684117 + E 84 +TTS (ENSMUST00000142312) chr2 74684118 74684218 + TTS 49 +exon (ENSMUST00000048086, exon 2 of 2)--2 chr2 74684219 74686965 + E 84 +TTS (ENSMUST00000048086) chr2 74686966 74687066 + TTS 35 +intron (ENSMUST00000136302, intron 2 of 2) chr2 74687067 74691873 + I 158 +promoter-TSS (ENSMUST00000061745) chr2 74691874 74691974 + P 9 +5' UTR (ENSMUST00000061745, exon 1 of 2) chr2 74691975 74691979 + 5UTR 95 +exon (ENSMUST00000061745, exon 1 of 2) chr2 74691980 74692724 + E 96 +intron (ENSMUST00000061745, intron 1 of 1) chr2 74692725 74694090 + I 158 +exon (ENSMUST00000061745, exon 2 of 2) chr2 74694091 74694143 + E 98 +TTS (ENSMUST00000136302) chr2 74694144 74694244 + TTS 46 +exon (ENSMUST00000061745, exon 2 of 2)--2 chr2 74694245 74694368 + E 98 +3' UTR (ENSMUST00000061745, exon 2 of 2) chr2 74694369 74695054 + 3UTR 97 +TTS (ENSMUST00000061745) chr2 74695055 74695155 + TTS 38 +Intergenic--4 chr2 74695156 74695469 + N 1900000000 +promoter-TSS (ENSMUST00000126966) chr2 74695470 74695570 + P 15 +promoter-TSS (ENSMUST00000152027) chr2 74695571 74695651 + P 25 +exon (ENSMUST00000126966, exon 1 of 2) chr2 74695652 74695732 + E 118 +intron (ENSMUST00000126966, intron 1 of 1) chr2 74695733 74696717 + I 158 +TTS (ENSMUST00000190845) chr2 74696718 74696818 - TTS 57 +exon (ENSMUST00000190845, exon 2 of 2) chr2 74696819 74696841 - E 156 +intron (ENSMUST00000190845, intron 1 of 1) chr2 74696842 74697030 - I 158 +exon (ENSMUST00000126966, exon 2 of 2) chr2 74697031 74697314 + E 119 +TTS (ENSMUST00000126966) chr2 74697315 74697415 + TTS 44 +exon (ENSMUST00000190845, exon 1 of 2) chr2 74697416 74697535 - E 157 +promoter-TSS (ENSMUST00000190845) chr2 74697536 74697636 - P 28 +Intergenic--5 chr2 74697637 74697676 + N 1900000000 +promoter-TSS (ENSMUST00000059272) chr2 74697677 74697777 + P 8 +5' UTR (ENSMUST00000059272, exon 1 of 2) chr2 74697778 74698055 + 5UTR 91 +exon (ENSMUST00000059272, exon 1 of 2) chr2 74698056 74698833 + E 92 +intron (ENSMUST00000059272, intron 1 of 1) chr2 74698834 74699179 + I 158 +exon (ENSMUST00000059272, exon 2 of 2) chr2 74699180 74699421 + E 94 +3' UTR (ENSMUST00000059272, exon 2 of 2) chr2 74699422 74700157 + 3UTR 93 +TTS (ENSMUST00000059272) chr2 74700158 74700258 + TTS 37 +Intergenic--6 chr2 74700259 74700955 + N 1900000000 +TTS (ENSMUST00000198895) chr2 74700956 74701056 - TTS 58 +exon (ENSMUST00000198895, exon 1 of 1) chr2 74701057 74701091 - E 158 +promoter-TSS (ENSMUST00000198895) chr2 74701092 74701192 - P 29 +Intergenic--7 chr2 74701193 74703197 + N 1900000000 +TTS (ENSMUST00000132326) chr2 74703198 74703298 - TTS 45 +exon (ENSMUST00000132326, exon 2 of 2) chr2 74703299 74703622 - E 120 +intron (ENSMUST00000132326, intron 1 of 1) chr2 74703623 74704564 - I 158 +promoter-TSS (ENSMUST00000151380) chr2 74704565 74704665 + P 24 +5' UTR (ENSMUST00000151380, exon 1 of 3) chr2 74704666 74704724 + 5UTR 147 +intron (ENSMUST00000151380, intron 1 of 2) chr2 74704725 74704854 + I 158 +promoter-TSS (ENSMUST00000019749) chr2 74704855 74704955 + P 3 +5' UTR (ENSMUST00000019749, exon 1 of 2) chr2 74704956 74705101 + 5UTR 66 +promoter-TSS (ENSMUST00000074721) chr2 74705102 74705202 + P 10 +5' UTR (ENSMUST00000074721, exon 1 of 2) chr2 74705152 74705202 + 5UTR 99 +5' UTR (ENSMUST00000019749, exon 1 of 2)--2 chr2 74705203 74705547 + 5UTR 66 +exon (ENSMUST00000019749, exon 1 of 2) chr2 74705548 74706118 + E 67 +intron (ENSMUST00000074721, intron 1 of 1) chr2 74706119 74706513 + I 158 +exon (ENSMUST00000019749, exon 2 of 2) chr2 74706514 74706761 + E 69 +TTS (ENSMUST00000151380) chr2 74706762 74706862 + TTS 53 +3' UTR (ENSMUST00000019749, exon 2 of 2) chr2 74706863 74707256 + 3UTR 68 +TTS (ENSMUST00000074721) chr2 74707257 74707357 + TTS 39 +3' UTR (ENSMUST00000019749, exon 2 of 2)--2 chr2 74707358 74707882 + 3UTR 68 +TTS (ENSMUST00000019749) chr2 74707883 74707983 + TTS 32 +intron (ENSMUST00000132326, intron 1 of 1)--2 chr2 74707984 74709992 - I 158 +TTS (ENSMUST00000156342) chr2 74709993 74710093 - TTS 55 +exon (ENSMUST00000156342, exon 2 of 2) chr2 74710094 74710142 - E 153 +TTS (ENSMUST00000145799) chr2 74710143 74710243 - TTS 52 +exon (ENSMUST00000145799, exon 3 of 3) chr2 74710244 74710281 - E 144 +intron (ENSMUST00000145799, intron 2 of 2) chr2 74710282 74711876 - I 158 +promoter-TSS (ENSMUST00000111983) chr2 74711877 74711977 + P 14 +promoter-TSS (ENSMUST00000144040) chr2 74711978 74711979 + P 21 +5' UTR (ENSMUST00000111983, exon 1 of 3) chr2 74711980 74712003 + 5UTR 113 +promoter-TSS (ENSMUST00000132326) chr2 74712004 74712104 - P 16 +5' UTR (ENSMUST00000111983, exon 1 of 3)--2 chr2 74712105 74712316 + 5UTR 113 +exon (ENSMUST00000156342, exon 1 of 2) chr2 74712317 74712475 - E 154 +promoter-TSS (ENSMUST00000156342) chr2 74712476 74712576 - P 26 +intron (ENSMUST00000111983, intron 1 of 2) chr2 74712577 74713075 + I 158 +TTS (ENSMUST00000139005) chr2 74713076 74713176 - TTS 47 +exon (ENSMUST00000139005, exon 2 of 2) chr2 74713177 74714401 - E 125 +intron (ENSMUST00000145799, intron 1 of 2) chr2 74714402 74715705 - I 158 +exon (ENSMUST00000139005, exon 1 of 2) chr2 74715706 74715945 - E 126 +promoter-TSS (ENSMUST00000145799) chr2 74715946 74716046 - P 23 +exon (ENSMUST00000139005, exon 1 of 2)--2 chr2 74716047 74716079 - E 126 +promoter-TSS (ENSMUST00000139005) chr2 74716080 74716180 - P 18 +intron (ENSMUST00000111983, intron 1 of 2)--2 chr2 74716181 74721927 + I 158 +promoter-TSS (ENSMUST00000047904) chr2 74721928 74722028 + P 5 +5' UTR (ENSMUST00000047904, exon 1 of 6) chr2 74722029 74722177 + 5UTR 75 +intron (ENSMUST00000047904, intron 1 of 5) chr2 74722178 74722552 + I 158 +5' UTR (ENSMUST00000047904, exon 2 of 6) chr2 74722553 74722631 + 5UTR 76 +intron (ENSMUST00000144040, intron 2 of 6) chr2 74722632 74723331 + I 158 +5' UTR (ENSMUST00000047904, exon 3 of 6) chr2 74723332 74723367 + 5UTR 77 +intron (ENSMUST00000144040, intron 3 of 6) chr2 74723368 74725462 + I 158 +5' UTR (ENSMUST00000047904, exon 4 of 6) chr2 74725463 74725978 + 5UTR 78 +intron (ENSMUST00000144040, intron 5 of 6) chr2 74725979 74726019 + I 158 +promoter-TSS (ENSMUST00000083566) chr2 74726020 74726120 + P 11 +TTS (ENSMUST00000083566) chr2 74726121 74726187 + TTS 40 +intron (ENSMUST00000144040, intron 5 of 6)--2 chr2 74726188 74726677 + I 158 +promoter-TSS (ENSMUST00000053932) chr2 74726678 74726778 + P 7 +5' UTR (ENSMUST00000053932, exon 1 of 4) chr2 74726779 74726875 + 5UTR 85 +5' UTR (ENSMUST00000047904, exon 5 of 6) chr2 74726876 74727023 + 5UTR 79 +promoter-TSS (ENSMUST00000111980) chr2 74727024 74727124 + P 12 +5' UTR (ENSMUST00000111980, exon 1 of 2) chr2 74727074 74727124 + 5UTR 104 +5' UTR (ENSMUST00000047904, exon 5 of 6)--2 chr2 74727125 74727278 + 5UTR 79 +exon (ENSMUST00000047904, exon 5 of 6) chr2 74727279 74727705 + E 80 +intron (ENSMUST00000053932, intron 1 of 3) chr2 74727706 74728261 + I 158 +exon (ENSMUST00000047904, exon 6 of 6) chr2 74728262 74728587 + E 82 +3' UTR (ENSMUST00000047904, exon 6 of 6) chr2 74728588 74728817 + 3UTR 81 +TTS (ENSMUST00000144040) chr2 74728818 74728918 + TTS 50 +3' UTR (ENSMUST00000047904, exon 6 of 6)--2 chr2 74728919 74729072 + 3UTR 81 +TTS (ENSMUST00000111980) chr2 74729073 74729109 + TTS 41 +TTS (ENSMUST00000047904) chr2 74729110 74729210 + TTS 34 +intron (ENSMUST00000053932, intron 2 of 3) chr2 74729211 74732862 + I 158 +promoter-TSS (ENSMUST00000144544) chr2 74732863 74732963 + P 22 +5' UTR (ENSMUST00000144544, exon 1 of 2) chr2 74732964 74733040 + 5UTR 141 +intron (ENSMUST00000144544, intron 1 of 1) chr2 74733041 74736464 + I 158 +promoter-TSS (ENSMUST00000111982) chr2 74736465 74736565 + P 13 +5' UTR (ENSMUST00000111982, exon 1 of 3) chr2 74736566 74736705 + 5UTR 108 +intron (ENSMUST00000111982, intron 1 of 2) chr2 74736706 74739568 + I 158 +promoter-TSS (ENSMUST00000047830) chr2 74739569 74739669 + P 4 +5' UTR (ENSMUST00000047830, exon 1 of 3) chr2 74739670 74739703 + 5UTR 70 +intron (ENSMUST00000047830, intron 1 of 2) chr2 74739704 74743927 + I 158 +5' UTR (ENSMUST00000047830, exon 2 of 3) chr2 74743928 74744011 + 5UTR 71 +exon (ENSMUST00000047830, exon 2 of 3) chr2 74744012 74744163 + E 72 +TTS (ENSMUST00000144544) chr2 74744164 74744264 + TTS 51 +exon (ENSMUST00000047830, exon 2 of 3)--2 chr2 74744265 74744555 + E 72 +intron (ENSMUST00000111983, intron 2 of 2) chr2 74744556 74745623 + I 158 +promoter-TSS (ENSMUST00000140666) chr2 74745624 74745724 + P 19 +promoter-TSS (ENSMUST00000190553) chr2 74745725 74745772 + P 27 +5' UTR (ENSMUST00000140666, exon 1 of 2) chr2 74745773 74746156 + 5UTR 127 +exon (ENSMUST00000140666, exon 1 of 2) chr2 74746157 74746220 + E 128 +exon (ENSMUST00000190553, exon 1 of 1) chr2 74746221 74746321 + E 155 +exon (ENSMUST00000047830, exon 3 of 3) chr2 74746322 74746545 + E 74 +TTS (ENSMUST00000140666) chr2 74746546 74746646 + TTS 48 +exon (ENSMUST00000047830, exon 3 of 3)--2 chr2 74746647 74747079 + E 74 +3' UTR (ENSMUST00000047830, exon 3 of 3) chr2 74747080 74747849 + 3UTR 73 +3' UTR (ENSMUST00000111983, exon 3 of 3) chr2 74747080 74747849 + 3UTR 116 +TTS (ENSMUST00000047830) chr2 74747850 74747950 + TTS 33 +TTS (ENSMUST00000053932) chr2 74747951 74747968 + TTS 36 +3' UTR (ENSMUST00000111983, exon 3 of 3)--2 chr2 74747969 74748220 + 3UTR 116 +TTS (ENSMUST00000111983) chr2 74748221 74748321 + TTS 43 +exon (ENSMUST00000190553, exon 1 of 1)--2 chr2 74748322 74748391 + E 155 +TTS (ENSMUST00000190553) chr2 74748392 74748492 + TTS 56 +Intergenic--8 chr2 74748493 1500000000 + N 1900000000