Mercurial > repos > iuc > homer_gtf_to_annotations
diff test-data/motif_test1/homerResults/motif4.info.html @ 0:8ebb6520eef4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
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| date | Sun, 08 Aug 2021 11:04:17 +0000 |
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+<TR><TD>p-value:</TD><TD>1e-1</TD></TR> +<TR><TD>log p-value:</TD><TD>-2.912e+00</TD></TR> +<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR> +<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR> +<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR> +<TR><TD>Number of Background Sequences with motif</TD><TD>218.1</TD></TR> +<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.44%</TD></TR> +<TR><TD>Average Position of motif in Targets</TD><TD>180.0 +/- 0.0bp</TD></TR> +<TR><TD>Average Position of motif in Background</TD><TD>95.7 +/- 83.7bp</TD></TR> +<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR> +<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR> +<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif4.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif4RV.motif">reverse opposite</A></TD></TR> +<TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif4.logo.svg">forward logo</A><BR/><A HREF="motif4RV.logo.svg">reverse opposite</A></TD></TR> +</TABLE> +<H3>Matches to Known Motifs</H3> +<TABLE border="1" cellpading="0" cellspacing="0"> +<TR><TD> +<H4>RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap</H4> +<TABLE><TR><TD> +<TABLE> +<TR><TD>Match Rank:</TD><TD>1</TD></TR> +<TR><TD>Score:</TD><TD>0.66</TD</TR> +<TR><TD>Offset:</TD><TD>-2</TD</TR> +<TR><TD>Orientation:</TD><TD>forward strand</TD></TR> +<TR><TD>Alignment:</TD><TD><FONT face="courier">--CTCCTGAGACTG</FONT><BR><FONT face="courier">ATCACCTGAGGC--</FONT></TD></TR></TABLE> +</TD><TD> +<svg width="355" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.25,2,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.25,0,36.5)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.25,0,24)">G</text> + <text fill="#DD0000" x="0" y="0" 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