Mercurial > repos > iuc > homer_gtf_to_annotations

diff test-data/motif_test1/homerResults/motif5.similar.html @ 0:8ebb6520eef4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author: iuc
date: Sun, 08 Aug 2021 11:04:17 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/motif_test1/homerResults/motif5.similar.html	Sun Aug 08 11:04:17 2021 +0000
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+<HTML><HEAD><TITLE>motif5</TITLE></HEAD>
+<H2>Information for motif5</H2>
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+<BR/>
+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>p-value:</TD><TD>1e-1</TD></TR>
+<TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
+<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
+<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
+<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
+<TR><TD>Number of Background Sequences with motif</TD><TD>219.8</TD></TR>
+<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.48%</TD></TR>
+<TR><TD>Average Position of motif in Targets</TD><TD>113.0 +/- 0.0bp</TD></TR>
+<TR><TD>Average Position of motif in Background</TD><TD>94.6 +/- 75.6bp</TD></TR>
+<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
+<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
+<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif5.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif5RV.motif">reverse opposite</A></TD></TR>
+</TABLE>
+<H3>Similar de novo motifs found</H3>
+<TABLE border="1" cellpading="0" cellspacing="0">
+<TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
+</TABLE>
+<P></P>
+</BODY></HTML>