Mercurial > repos > iuc > homer_gtf_to_annotations
diff tool-data/homer_preparse.loc.sample @ 0:8ebb6520eef4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
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| date | Sun, 08 Aug 2021 11:04:17 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/homer_preparse.loc.sample Sun Aug 08 11:04:17 2021 +0000 @@ -0,0 +1,25 @@ +# homer_preparse.loc.sample +# This is a *.loc.sample file distributed with Galaxy that enables tools +# to use a directory of indexed data files. This one is for Homer preparsed genomes. +# The file should include an one line entry for each index set. +# The path points to the "directory" for the set, not a specific file. +# It has six text columns seperated by TABS. +# +# <unique_preparse_id> <dbkey> <mask> <size> <display_name> <directory_path> <path_fasta> <version> +# +# So, for example, if you had phiX174 preparsed with 200bp stored in: +# +# /tmp/phix_200 +# +# containing phiX174.fasta.200.* files, such as: +# -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.cgbins +# -rw-r--r-- 1 ldelisle ldelisle 249K Jul 9 10:14 phiX174.fasta.200.cgfreq +# -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.gcbins +# -rw-r--r-- 1 ldelisle ldelisle 169K Jul 9 10:14 phiX174.fasta.200.pos +# -rw-r--r-- 1 ldelisle ldelisle 955K Jul 9 10:14 phiX174.fasta.200.seq +# +# then the homer_preparse.loc entry could look like this: +# +# phiX174_200 phiX174 False 200 phiX174 (200bp) /tmp/phix_200 /tmp/phiX174.fasta 4.11 +# +#