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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:02:25 +0000
parents 8ebb6520eef4
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<HTML><HEAD><TITLE>motif1</TITLE></HEAD>
<H2>Information for motif1</H2>
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<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>p-value:</TD><TD>1e-1</TD></TR>
<TR><TD>log p-value:</TD><TD>-2.921e+00</TD></TR>
<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
<TR><TD>Number of Background Sequences with motif</TD><TD>216.0</TD></TR>
<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.39%</TD></TR>
<TR><TD>Average Position of motif in Targets</TD><TD>105.0 +/- 0.0bp</TD></TR>
<TR><TD>Average Position of motif in Background</TD><TD>97.7 +/- 71.4bp</TD></TR>
<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif1.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif1RV.motif">reverse opposite</A></TD></TR>
</TABLE>
<H3>Similar de novo motifs found</H3>
<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
<TR><TD>1</TD><TD>0.639</TD><TD><svg width="255" height="50">
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</TD><TD>1e-1</TD><TD>-2.906976</TD><TD>100.00%</TD><TD>5.48%</TD><TD><A target="_blank" HREF="motif1.similar1.motif">motif file (matrix)</A></TD></TR>
<TR><TD>2</TD><TD>0.667</TD><TD><svg width="305" height="50">
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</TD><TD>1e-1</TD><TD>-2.906976</TD><TD>100.00%</TD><TD>5.48%</TD><TD><A target="_blank" HREF="motif1.similar2.motif">motif file (matrix)</A></TD></TR>
<TR><TD>3</TD><TD>0.714</TD><TD><svg width="205" height="50">
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</TD><TD>1e-1</TD><TD>-2.888876</TD><TD>100.00%</TD><TD>5.58%</TD><TD><A target="_blank" HREF="motif1.similar3.motif">motif file (matrix)</A></TD></TR>
</TABLE>
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