Mercurial > repos > iuc > homer_gtf_to_annotations
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author | iuc |
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date | Fri, 07 Apr 2023 15:02:25 +0000 |
parents | 8ebb6520eef4 |
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# homer_preparse.loc.sample # This is a *.loc.sample file distributed with Galaxy that enables tools # to use a directory of indexed data files. This one is for Homer preparsed genomes. # The file should include an one line entry for each index set. # The path points to the "directory" for the set, not a specific file. # It has six text columns seperated by TABS. # # <unique_preparse_id> <dbkey> <mask> <size> <display_name> <directory_path> <path_fasta> <version> # # So, for example, if you had phiX174 preparsed with 200bp stored in: # # /tmp/phix_200 # # containing phiX174.fasta.200.* files, such as: # -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.cgbins # -rw-r--r-- 1 ldelisle ldelisle 249K Jul 9 10:14 phiX174.fasta.200.cgfreq # -rw-r--r-- 1 ldelisle ldelisle 83K Jul 9 10:14 phiX174.fasta.200.gcbins # -rw-r--r-- 1 ldelisle ldelisle 169K Jul 9 10:14 phiX174.fasta.200.pos # -rw-r--r-- 1 ldelisle ldelisle 955K Jul 9 10:14 phiX174.fasta.200.seq # # then the homer_preparse.loc entry could look like this: # # phiX174_200 phiX174 False 200 phiX174 (200bp) /tmp/phix_200 /tmp/phiX174.fasta 4.11 # #