annotate test-data/motif_test1/homerResults/motif2.info.html @ 2:f15794662a69 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:00:57 +0000
parents db456c398880
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1 <HTML><HEAD><TITLE>Motif 2</TITLE></HEAD>
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2 <H2>Information for 2-TGCCATCTCAAA (Motif 2)</H2>
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3 <svg width="305" height="50">
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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103 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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104 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,152,34)">A</text>
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106 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
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107 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,44)">C</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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108 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,39)">G</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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109 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,176,34)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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111 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text>
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112 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,44)">C</text>
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113 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
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116 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
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117 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
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118 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
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119 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,225,34)">G</text>
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121 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,252,49)">A</text>
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123 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,251,39)">T</text>
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126 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,49)">C</text>
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128 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text>
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129 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,277,34)">A</text>
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131 </g>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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132 </svg>
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133 <BR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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134 <TABLE border="1" cellpading="0" cellspacing="0">
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135 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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136 <TR><TD>log p-value:</TD><TD>-2.921e+00</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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137 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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138 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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139 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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140 <TR><TD>Number of Background Sequences with motif</TD><TD>216.2</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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141 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.39%</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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142 <TR><TD>Average Position of motif in Targets</TD><TD>146.0 +/- 0.0bp</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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143 <TR><TD>Average Position of motif in Background</TD><TD>105.7 +/- 83.1bp</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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144 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
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145 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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146 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif2.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif2RV.motif">reverse opposite</A></TD></TR>
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147 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif2.logo.svg">forward logo</A><BR/><A HREF="motif2RV.logo.svg">reverse opposite</A></TD></TR>
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148 </TABLE>
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149 <H3>Matches to Known Motifs</H3>
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150 <TABLE border="1" cellpading="0" cellspacing="0">
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151 <TR><TD>
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152 <H4>RFX1/RFX1_YPD/[](Harbison)/Yeast</H4>
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153 <TABLE><TR><TD>
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154 <TABLE>
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155 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
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156 <TR><TD>Score:</TD><TD>0.64</TD</TR>
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157 <TR><TD>Offset:</TD><TD>-2</TD</TR>
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158 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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159 <TR><TD>Alignment:</TD><TD><FONT face="courier">--TGCCATCTCAAA</FONT><BR><FONT face="courier">GTTGCCATGGCAA-</FONT></TD></TR></TABLE>
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160 </TD><TD>
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161 <svg width="355" height="50">
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162 <g font-family="Arial" font-weight="bold" font-size="66.5">
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163 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.25,2,49)">A</text>
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310 </svg>
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312 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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313 </TD></TR>
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314 <TR><TD>
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315 <H4>HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer</H4>
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316 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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317 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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318 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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319 <TR><TD>Score:</TD><TD>0.64</TD</TR>
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320 <TR><TD>Offset:</TD><TD>0</TD</TR>
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321 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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322 <TR><TD>Alignment:</TD><TD><FONT face="courier">TGCCATCTCAAA</FONT><BR><FONT face="courier">TGCCAGCB----</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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323 </TD><TD>
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324 <svg width="305" height="50">
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455 </TD></TR></TABLE>
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456 </TD></TR>
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iuc
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458 <H4>O2/MA1417.1/Jaspar</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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459 <TABLE><TR><TD>
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460 <TABLE>
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461 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
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462 <TR><TD>Score:</TD><TD>0.63</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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463 <TR><TD>Offset:</TD><TD>-1</TD</TR>
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464 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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465 <TR><TD>Alignment:</TD><TD><FONT face="courier">-TGCCATCTCAAA</FONT><BR><FONT face="courier">GTGCCACGTCATC</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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466 </TD><TD>
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608 </TD></TR></TABLE>
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609 </TD></TR>
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610 <TR><TD>
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611 <H4>Hic1/MA0739.1/Jaspar</H4>
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612 <TABLE><TR><TD>
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613 <TABLE>
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614 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
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615 <TR><TD>Score:</TD><TD>0.63</TD</TR>
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616 <TR><TD>Offset:</TD><TD>-1</TD</TR>
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617 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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618 <TR><TD>Alignment:</TD><TD><FONT face="courier">-TGCCATCTCAAA</FONT><BR><FONT face="courier">ATGCCAACC----</FONT></TD></TR></TABLE>
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761 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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762 </TD></TR>
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763 <TR><TD>
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764 <H4>exd/dmmpmm(Noyes_hd)/fly</H4>
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765 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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766 <TABLE>
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diff changeset
767 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
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768 <TR><TD>Score:</TD><TD>0.62</TD</TR>
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769 <TR><TD>Offset:</TD><TD>3</TD</TR>
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770 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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771 <TR><TD>Alignment:</TD><TD><FONT face="courier">TGCCATCTCAAA-</FONT><BR><FONT face="courier">---NTTGTCAAAN</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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914 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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915 </TD></TR>
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917 <H4>PB0098.1_Zfp410_1/Jaspar</H4>
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918 <TABLE><TR><TD>
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919 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
920 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
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921 <TR><TD>Score:</TD><TD>0.61</TD</TR>
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922 <TR><TD>Offset:</TD><TD>-2</TD</TR>
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923 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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924 <TR><TD>Alignment:</TD><TD><FONT face="courier">--TGCCATCTCAAA---</FONT><BR><FONT face="courier">NNNTCCATCCCATAANN</FONT></TD></TR></TABLE>
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925 </TD><TD>
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1107 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1108 </TD></TR>
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1109 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1110 <H4>Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer</H4>
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1111 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1112 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
1113 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
1114 <TR><TD>Score:</TD><TD>0.60</TD</TR>
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diff changeset
1115 <TR><TD>Offset:</TD><TD>0</TD</TR>
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1116 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
1117 <TR><TD>Alignment:</TD><TD><FONT face="courier">TGCCATCTCAAA</FONT><BR><FONT face="courier">TGTCANYT----</FONT></TD></TR></TABLE>
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1118 </TD><TD>
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1250 </TD></TR></TABLE>
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1251 </TD></TR>
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1252 <TR><TD>
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diff changeset
1253 <H4>NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1254 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1255 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
1256 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
1257 <TR><TD>Score:</TD><TD>0.60</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
1258 <TR><TD>Offset:</TD><TD>0</TD</TR>
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1259 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1260 <TR><TD>Alignment:</TD><TD><FONT face="courier">TGCCATCTCAAA----</FONT><BR><FONT face="courier">TGCCAAAATAAACANN</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1261 </TD><TD>
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1431 </svg>
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1432
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1433 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1434 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1435 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1436 <H4>PB0029.1_Hic1_1/Jaspar</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1437 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1438 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1439 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1440 <TR><TD>Score:</TD><TD>0.59</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1441 <TR><TD>Offset:</TD><TD>-4</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1442 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1443 <TR><TD>Alignment:</TD><TD><FONT face="courier">----TGCCATCTCAAA</FONT><BR><FONT face="courier">ACTATGCCAACCTACC</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1444 </TD><TD>
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1445 <svg width="405" height="50">
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1446 <g font-family="Arial" font-weight="bold" font-size="66.5">
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1616 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1617 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1618 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1619 <H4>RFX1(MacIsaac)/Yeast</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1620 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1621 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1622 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1623 <TR><TD>Score:</TD><TD>0.59</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1624 <TR><TD>Offset:</TD><TD>-2</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1625 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1626 <TR><TD>Alignment:</TD><TD><FONT face="courier">--TGCCATCTCAAA</FONT><BR><FONT face="courier">GTTGCCATGGCAAC</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1627 </TD><TD>
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1628 <svg width="355" height="50">
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