Mercurial > repos > iuc > homer_scanmotifgenomewide

annotate test-data/motif_test1/homerResults/motif3.info.html @ 2:f15794662a69 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:00:57 +0000
parents db456c398880
children
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1 <HTML><HEAD><TITLE>Motif 3</TITLE></HEAD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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2 <H2>Information for 3-CGAGGCTAACCC (Motif 3)</H2>
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3 <svg width="305" height="50">
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4 <g font-family="Arial" font-weight="bold" font-size="66.5">
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5 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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98 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,126,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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101 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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102 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,44)">C</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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103 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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104 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,150,34)">G</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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106 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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107 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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108 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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109 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,175,34)">C</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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111 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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112 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,200,44)">G</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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113 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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114 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,200,34)">C</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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116 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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117 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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118 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,39)">G</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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119 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,226,34)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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121 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,252,49)">A</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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122 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,250,44)">G</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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123 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,251,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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124 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,250,34)">C</text>
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126 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,277,49)">A</text>
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127 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,44)">C</text>
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128 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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129 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,275,34)">G</text>
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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131 </g>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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132 </svg>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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133 <BR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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134 <TABLE border="1" cellpading="0" cellspacing="0">
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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135 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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136 <TR><TD>log p-value:</TD><TD>-2.916e+00</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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137 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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138 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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139 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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140 <TR><TD>Number of Background Sequences with motif</TD><TD>217.8</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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141 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.43%</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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142 <TR><TD>Average Position of motif in Targets</TD><TD>91.0 +/- 0.0bp</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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143 <TR><TD>Average Position of motif in Background</TD><TD>101.8 +/- 65.4bp</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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144 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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145 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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146 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif3.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif3RV.motif">reverse opposite</A></TD></TR>
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147 <TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif3.logo.svg">forward logo</A><BR/><A HREF="motif3RV.logo.svg">reverse opposite</A></TD></TR>
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148 </TABLE>
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149 <H3>Matches to Known Motifs</H3>
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150 <TABLE border="1" cellpading="0" cellspacing="0">
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151 <TR><TD>
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152 <H4>PH0015.1_Crx/Jaspar</H4>
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153 <TABLE><TR><TD>
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154 <TABLE>
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155 <TR><TD>Match Rank:</TD><TD>1</TD></TR>
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156 <TR><TD>Score:</TD><TD>0.63</TD</TR>
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157 <TR><TD>Offset:</TD><TD>2</TD</TR>
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158 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
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159 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC------</FONT><BR><FONT face="courier">--AGGCTAATCCCCAANG</FONT></TD></TR></TABLE>
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160 </TD><TD>
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161 <svg width="455" height="50">
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162 <g font-family="Arial" font-weight="bold" font-size="66.5">
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163 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
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349 </g>
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350 </svg>
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351
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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352 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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353 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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354 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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355 <H4>CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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356 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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357 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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358 <TR><TD>Match Rank:</TD><TD>2</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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359 <TR><TD>Score:</TD><TD>0.62</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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360 <TR><TD>Offset:</TD><TD>4</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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361 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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362 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC</FONT><BR><FONT face="courier">----GCTAATCC</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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363 </TD><TD>
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364 <svg width="305" height="50">
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365 <g font-family="Arial" font-weight="bold" font-size="66.5">
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495 </TD></TR></TABLE>
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496 </TD></TR>
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497 <TR><TD>
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iuc
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498 <H4>ttk/dmmpmm(Noyes)/fly</H4>
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499 <TABLE><TR><TD>
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500 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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501 <TR><TD>Match Rank:</TD><TD>3</TD></TR>
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502 <TR><TD>Score:</TD><TD>0.61</TD</TR>
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503 <TR><TD>Offset:</TD><TD>0</TD</TR>
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504 <TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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505 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC--</FONT><BR><FONT face="courier">CAAGGATAATCNAA</FONT></TD></TR></TABLE>
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506 </TD><TD>
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657
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658 </TD></TR></TABLE>
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659 </TD></TR>
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660 <TR><TD>
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661 <H4>bcd/dmmpmm(Bergman)/fly</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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662 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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663 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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664 <TR><TD>Match Rank:</TD><TD>4</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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665 <TR><TD>Score:</TD><TD>0.59</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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666 <TR><TD>Offset:</TD><TD>2</TD</TR>
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667 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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668 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC-</FONT><BR><FONT face="courier">--CCNCTAATCCN</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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669 </TD><TD>
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670 <svg width="330" height="50">
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811 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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812 </TD></TR>
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813 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
814 <H4>bcd/dmmpmm(Noyes_hd)/fly</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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815 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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816 <TABLE>
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diff changeset
817 <TR><TD>Match Rank:</TD><TD>5</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
818 <TR><TD>Score:</TD><TD>0.59</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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819 <TR><TD>Offset:</TD><TD>3</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
820 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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diff changeset
821 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC-</FONT><BR><FONT face="courier">---GGTTAATCCN</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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822 </TD><TD>
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964 </TD></TR></TABLE>
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967 <H4>HOW(KH)/Drosophila_melanogaster-RNCMPT00118-PBM/HughesRNA</H4>
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969 <TABLE>
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970 <TR><TD>Match Rank:</TD><TD>6</TD></TR>
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971 <TR><TD>Score:</TD><TD>0.59</TD</TR>
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972 <TR><TD>Offset:</TD><TD>4</TD</TR>
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973 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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974 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC</FONT><BR><FONT face="courier">----ACTAACA-</FONT></TD></TR></TABLE>
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1107 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1108 </TD></TR>
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1109 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
parents:
diff changeset
1110 <H4>GT-1/MA1020.1/Jaspar</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1111 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1112 <TABLE>
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iuc
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1113 <TR><TD>Match Rank:</TD><TD>7</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1114 <TR><TD>Score:</TD><TD>0.59</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1115 <TR><TD>Offset:</TD><TD>4</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1116 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1117 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC</FONT><BR><FONT face="courier">----GTTAACCA</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1118 </TD><TD>
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1119 <svg width="305" height="50">
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1250 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1251 </TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1252 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1253 <H4>Kr/dmmpmm(Papatsenko)/fly</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1254 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1255 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1256 <TR><TD>Match Rank:</TD><TD>8</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1257 <TR><TD>Score:</TD><TD>0.58</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1258 <TR><TD>Offset:</TD><TD>6</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1259 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1260 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC---</FONT><BR><FONT face="courier">------TAACCCTTT</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1261 </TD><TD>
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1262 <svg width="380" height="50">
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1421 </svg>
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db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1423 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1424 </TD></TR>
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1425 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1426 <H4>HNRNPK(KH)/Homo_sapiens-RNCMPT00026-PBM/HughesRNA</H4>
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1427 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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1428 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1429 <TR><TD>Match Rank:</TD><TD>9</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1430 <TR><TD>Score:</TD><TD>0.58</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1431 <TR><TD>Offset:</TD><TD>5</TD</TR>
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diff changeset
1432 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
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iuc
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diff changeset
1433 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC</FONT><BR><FONT face="courier">-----CCAACCC</FONT></TD></TR></TABLE>
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1434 </TD><TD>
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1435 <svg width="305" height="50">
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1566 </TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1567 </TD></TR>
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1568 <TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1569 <H4>bcd/dmmpmm(Papatsenko)/fly</H4>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1570 <TABLE><TR><TD>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1571 <TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1572 <TR><TD>Match Rank:</TD><TD>10</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1573 <TR><TD>Score:</TD><TD>0.58</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1574 <TR><TD>Offset:</TD><TD>4</TD</TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1575 <TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
iuc
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diff changeset
1576 <TR><TD>Alignment:</TD><TD><FONT face="courier">CGAGGCTAACCC-</FONT><BR><FONT face="courier">----CCTAATCCC</FONT></TD></TR></TABLE>
db456c398880 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
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1577 </TD><TD>
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