Mercurial > repos > iuc > homer_scanmotifgenomewide

comparison homer_scanMotifGenomeWide.xml @ 1:465be78e9b05 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
author iuc
date Thu, 06 Apr 2023 16:21:39 +0000
parents db456c398880
children
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0:db456c398880 1:465be78e9b05
1 <tool id="homer_scanMotifGenomeWide" name="scanMotifGenomeWide" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05" license="MIT"> 1 <tool id="homer_scanMotifGenomeWide" name="scanMotifGenomeWide" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" license="MIT">
2 <description/> 2 <description/>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/> 6 <expand macro="xrefs"/>
53 label="Report motif positions based on the 5' end of the motif sequence"/> 53 label="Report motif positions based on the 5' end of the motif sequence"/>
54 <param argument="-homer1" type="boolean" truevalue="-homer1" falsevalue="" checked="false" 54 <param argument="-homer1" type="boolean" truevalue="-homer1" falsevalue="" checked="false"
55 label="Use homer1 instead of homer2"/> 55 label="Use homer1 instead of homer2"/>
56 </inputs> 56 </inputs>
57 <outputs> 57 <outputs>
58 <data format="tabular" name="output_text" label="${tool.name} on ${on_string}"> 58 <data format="tabular" name="output_text" label="motif occurrences from ${tool.name} on ${on_string}">
59 <filter>bed is False</filter> 59 <filter>bed is False</filter>
60 </data> 60 </data>
61 <data format="bed" name="output_bed" label="${tool.name} on ${on_string}"> 61 <data format="bed" name="output_bed" label="motif occurrences from ${tool.name} on ${on_string} as bed">
62 <filter>bed is True</filter> 62 <filter>bed is True</filter>
63 </data> 63 </data>
64 </outputs> 64 </outputs>
65 <tests> 65 <tests>
66 <test expect_num_outputs="1"> 66 <test expect_num_outputs="1">