comparison test-data/motif_test1/homerResults/motif2.similar.html @ 0:db456c398880 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:13:33 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:db456c398880
1 <HTML><HEAD><TITLE>motif2</TITLE></HEAD>
2 <H2>Information for motif2</H2>
3 <svg width="305" height="50">
4 <g font-family="Arial" font-weight="bold" font-size="66.5">
5 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
6 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text>
7 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,39)">G</text>
8 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,1,34)">T</text>
9
10 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text>
11 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text>
12 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text>
13 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,25,34)">G</text>
14
15 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text>
16 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,50,44)">G</text>
17 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,51,39)">T</text>
18 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,50,34)">C</text>
19
20 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,77,49)">A</text>
21 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,75,44)">G</text>
22 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,76,39)">T</text>
23 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,75,34)">C</text>
24
25 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,100,49)">C</text>
26 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,100,44)">G</text>
27 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,101,39)">T</text>
28 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,102,34)">A</text>
29
30 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text>
31 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
32 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,125,39)">G</text>
33 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text>
34
35 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
36 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,44)">G</text>
37 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
38 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,150,34)">C</text>
39
40 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
41 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,44)">C</text>
42 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,39)">G</text>
43 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,176,34)">T</text>
44
45 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text>
46 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,200,44)">G</text>
47 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
48 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,200,34)">C</text>
49
50 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,49)">C</text>
51 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,44)">G</text>
52 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
53 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,227,34)">A</text>
54
55 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,250,49)">C</text>
56 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,250,44)">G</text>
57 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,251,39)">T</text>
58 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,252,34)">A</text>
59
60 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,49)">C</text>
61 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,275,44)">G</text>
62 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text>
63 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,277,34)">A</text>
64
65 </g>
66 </svg>
67 <BR/>
68 Reverse Opposite:<BR/><svg width="305" height="50">
69 <g font-family="Arial" font-weight="bold" font-size="66.5">
70 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
71 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text>
72 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,39)">G</text>
73 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,1,34)">T</text>
74
75 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text>
76 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text>
77 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,39)">G</text>
78 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,26,34)">T</text>
79
80 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text>
81 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,50,44)">C</text>
82 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,50,39)">G</text>
83 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,51,34)">T</text>
84
85 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,77,49)">A</text>
86 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,75,44)">C</text>
87 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,76,39)">T</text>
88 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,75,34)">G</text>
89
90 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,100,49)">C</text>
91 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,100,44)">G</text>
92 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,101,39)">T</text>
93 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,102,34)">A</text>
94
95 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text>
96 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
97 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,126,39)">T</text>
98 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,125,34)">G</text>
99
100 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,49)">C</text>
101 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,44)">G</text>
102 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
103 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,152,34)">A</text>
104
105 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
106 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,44)">C</text>
107 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,39)">G</text>
108 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,176,34)">T</text>
109
110 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text>
111 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,44)">C</text>
112 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
113 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,200,34)">G</text>
114
115 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
116 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
117 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
118 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,225,34)">G</text>
119
120 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,252,49)">A</text>
121 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,250,44)">G</text>
122 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,251,39)">T</text>
123 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,250,34)">C</text>
124
125 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,49)">C</text>
126 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,275,44)">G</text>
127 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text>
128 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,277,34)">A</text>
129
130 </g>
131 </svg>
132 <BR/>
133 <TABLE border="1" cellpading="0" cellspacing="0">
134 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
135 <TR><TD>log p-value:</TD><TD>-2.921e+00</TD></TR>
136 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
137 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
138 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
139 <TR><TD>Number of Background Sequences with motif</TD><TD>216.2</TD></TR>
140 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.39%</TD></TR>
141 <TR><TD>Average Position of motif in Targets</TD><TD>146.0 +/- 0.0bp</TD></TR>
142 <TR><TD>Average Position of motif in Background</TD><TD>105.7 +/- 83.1bp</TD></TR>
143 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
144 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
145 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif2.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif2RV.motif">reverse opposite</A></TD></TR>
146 </TABLE>
147 <H3>Similar de novo motifs found</H3>
148 <TABLE border="1" cellpading="0" cellspacing="0">
149 <TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
150 </TABLE>
151 <P></P>
152 </BODY></HTML>