Mercurial > repos > iuc > homer_scanmotifgenomewide
diff test-data/motif_test1/homerResults/motif4.similar.html @ 0:db456c398880 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
| author | iuc |
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| date | Mon, 13 Dec 2021 15:13:33 +0000 |
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+<TR><TD>p-value:</TD><TD>1e-1</TD></TR> +<TR><TD>log p-value:</TD><TD>-2.912e+00</TD></TR> +<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR> +<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR> +<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR> +<TR><TD>Number of Background Sequences with motif</TD><TD>218.1</TD></TR> +<TR><TD>Percentage of Background Sequences with motif</TD><TD>5.44%</TD></TR> +<TR><TD>Average Position of motif in Targets</TD><TD>180.0 +/- 0.0bp</TD></TR> +<TR><TD>Average Position of motif in Background</TD><TD>95.7 +/- 83.7bp</TD></TR> +<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR> +<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR> +<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif4.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif4RV.motif">reverse opposite</A></TD></TR> +</TABLE> +<H3>Similar de novo motifs found</H3> +<TABLE border="1" cellpading="0" cellspacing="0"> +<TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR> +<TR><TD>1</TD><TD>0.913</TD><TD><svg width="255" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,44)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,0,34)">C</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text> + <text fill="#0000EE" x="0" y="0" 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+<TR><TD>2</TD><TD>0.714</TD><TD><svg width="205" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,0,34)">G</text> + + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,27,34)">A</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,50,44)">C</text> + <text fill="#DD0000" 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