Mercurial > repos > iuc > humann2_associate
annotate README.rst @ 4:e57b437186b3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40"
author | iuc |
---|---|
date | Fri, 05 Feb 2021 18:27:28 +0000 |
parents | b6f52c19973d |
children |
rev | line source |
---|---|
0
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
1 Galaxy wrappers for HUMAnN2 |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
2 =========================== |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
3 |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
4 Galaxy should be able to automatically install the dependencies, i.e. the |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
5 HUMAnN2 binaries and its dependencies. |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
6 |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
7 After installation, you must tell Galaxy about the default databases for MetaPhlAn2 and HUMAnN2. |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
8 You need to use the data managers for that and installing: |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
9 |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
10 - MetaPhlAn2 database |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
11 - HUMAnN2 nucleotide database |
b6f52c19973d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
iuc
parents:
diff
changeset
|
12 - HUMAnN2 protein database |