Mercurial > repos > iuc > humann2_genefamilies_genus_level

diff humann2_genefamilies_genus_level.xml @ 0:c7ac7103023d draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 6753a2c0fec9222f5977cab43a855c63fa9f7bee
author: iuc
date: Tue, 01 Aug 2017 07:59:02 -0400
children: 79cd822debef
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/humann2_genefamilies_genus_level.xml	Tue Aug 01 07:59:02 2017 -0400
@@ -0,0 +1,31 @@
+<tool id="humann2_genefamilies_genus_level" name="Create a genus level gene families file" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>humann2_macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="version"/>
+    <command detect_errors="exit_code"><![CDATA[
+humann2_genefamilies_genus_level 
+    --input '$input'
+    --output '$output'
+    ]]></command>
+    <inputs>
+        <param argument="--input" type="data" format="tsv,tabular" label="Gene families input table"/>
+    </inputs>
+    <outputs>
+        <data format="tsv" name="output" label="${tool.name} on ${on_string}"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="demo_genefamilies.tsv"/>
+            <output name="output" md5="caaa6b18bffc15220c676df260545e46"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+@HELP_HEADER@
+
+By default, the gene families and pathways output files from HUMAnN2 are species level. This tool generates genus level gene families
+    ]]></help>
+    <expand macro="citations"/>
+</tool>