Mercurial > repos > iuc > humann2_reduce_table

comparison humann2_reduce_table.xml @ 0:e795ba0b91f4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b46aa969c01b7e5f4f133192899fa4da286ecf89-dirty
author iuc
date Mon, 13 Mar 2017 12:38:27 -0400
parents
children d020ce7b0e4c
comparison
equal deleted inserted replaced
-1:000000000000 0:e795ba0b91f4
1 <tool id="humann2_reduce_table" name="Reduce" version="@WRAPPER_VERSION@.0">
2 <description>a HUMAnN2 generated table</description>
3 <macros>
4 <import>humann2_macros.xml</import>
5 </macros>
6 <expand macro="requirements"/>
7 <expand macro="version"/>
8 <command detect_errors="exit_code"><![CDATA[
9 humann2_reduce_table
10 --input '$input'
11 -o '$output_table'
12 --function '$function'
13 --sort-by '$sort'
14 ]]></command>
15 <inputs>
16 <param argument="--input" type="data" format="tsv,tabular" label="Gene/pathway table"/>
17 <param argument="--function" type="select" label="Function to apply">
18 <option value="max" selected="true">Max</option>
19 <option value="sum">Sum</option>
20 <option value="mean">Mean</option>
21 <option value="min">Min</option>
22 </param>
23 <param name="sort" type="select" label="How to sort the output" argument="--sort-by">
24 <option value="name" selected="true">Name</option>
25 <option value="value">value</option>
26 <option value="level">level</option>
27 </param>
28 </inputs>
29 <outputs>
30 <data format="tsv" name="output_table" label="${tool.name} on ${on_string}: Reduced table" />
31 </outputs>
32 <tests>
33 <test>
34 <param name="input" value="demo_genefamilies.tsv"/>
35 <param name="function" value="max"/>
36 <param name="sort" value="name"/>
37 <output name="output_table" file="max_reduced_gene_family_abundance.tsv"/>
38 </test>
39 </tests>
40 <help><![CDATA[
41 @HELP_HEADER@
42
43 Reduce HUMAnN2 table is a tool to reduce the table given a function (max, sum, mean or min).
44 ]]></help>
45 <expand macro="citations"/>
46 </tool>