Mercurial > repos > iuc > humann_join_tables

annotate test-data/demo-taxonomic-profile.tabular @ 6:f01ca38fb6c5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit cb7dc8ff1810f6d335b5dd6615651f32a3ea7447
author iuc
date Fri, 27 Sep 2024 09:59:28 +0000
parents cf7f80d59099
children
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cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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1 #full-db
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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2 #metaphlan in --input_type fasta --read_min_len 70 --bt2_ps very-sensitive --min_mapq_val 5 --bowtie2db test-data/test-db/metaphlan-db --index demo-db-v30 -t rel_ab --tax_lev a --min_cu_len 2000 --add_viruses --stat_q 0.2 --perc_nonzero 0.33 --avoid_disqm --sample_id_key SampleID --sample_id Metaphlan_Analysis -o /tmp/tmp7hcectnz/files/000/dataset_2.dat --bowtie2out bowtie2out -s /tmp/tmp7hcectnz/files/000/dataset_4.dat --biom /tmp/tmp7hcectnz/files/000/dataset_5.dat --nproc 1
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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3 #SampleID Metaphlan_Analysis
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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4 #clade_name NCBI_tax_id relative_abundance additional_species
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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5 k__Bacteria 2 100.0
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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6 k__Bacteria|p__Bacteroidetes 2|976 100.0
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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7 k__Bacteria|p__Bacteroidetes|c__Bacteroidia 2|976|200643 100.0
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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8 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales 2|976|200643|171549 100.0
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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9 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae 2|976|200643|171549|815 100.0
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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10 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides 2|976|200643|171549|815|816 100.0
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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11 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_vulgatus 2|976|200643|171549|815|816|821 50.80292
cf7f80d59099 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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12 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_dorei 2|976|200643|171549|815|816|357276 49.19708