Mercurial > repos > iuc > hyphy_absrel

comparison hyphy_absrel.xml @ 32:3f59ebfbfe3d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e74f0c1ed183da674db365c3a6ce320b0c08d9bc"
author iuc
date Sat, 27 Nov 2021 11:25:19 +0000
parents 26de3a7b1cb9
children 212c958f6cee
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31:26de3a7b1cb9 32:3f59ebfbfe3d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="hyphy_absrel" name="HyPhy-aBSREL" version="@VERSION@+galaxy1" profile="19.09"> 2 <tool id="hyphy_absrel" name="HyPhy-aBSREL" version="@TOOL_VERSION@+galaxy2" profile="19.09">
3 <description>adaptive Branch Site Random Effects Likelihood</description> 3 <description>adaptive Branch Site Random Effects Likelihood</description>
4 <expand macro="bio_tools"/> 4 <expand macro="bio_tools"/>
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
18 --multiple-hits $multiple_hits 18 --multiple-hits $multiple_hits
19 @ERRORS@ 19 @ERRORS@
20 ]]></command> 20 ]]></command>
21 <inputs> 21 <inputs>
22 <expand macro="inputs"/> 22 <expand macro="inputs"/>
23 <param name="log" type="boolean" truevalue="" falsevalue="" label="Output aBSREL log to history"/>
24 <expand macro="gencode"/> 23 <expand macro="gencode"/>
25 <param name="multiple_hits" type="select" argument="--multiple-hits" label="Include support for multiple nucleotide substitutions"> 24 <param name="multiple_hits" type="select" argument="--multiple-hits" label="Include support for multiple nucleotide substitutions">
26 <option value="None">Use standard models which permit only single nucleotide changes to occur instantly</option> 25 <option value="None">Use standard models which permit only single nucleotide changes to occur instantly</option>
27 <option value="Double">Include branch-specific rates for double nucleotide substitutions</option> 26 <option value="Double">Include branch-specific rates for double nucleotide substitutions</option>
28 <option value="Double+Triple">Include branch-specific rates for double and triple nucleotide substitutions</option> 27 <option value="Double+Triple">Include branch-specific rates for double and triple nucleotide substitutions</option>