Mercurial > repos > iuc > hyphy_annotate

annotate test-data/relax-out2-1.json @ 9:e6009f23582c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
author iuc
date Wed, 30 Mar 2022 00:18:10 +0000
parents a88848771d2d
children 2318841ec191
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
1 {
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
2 "Synonymous site-posteriors": [
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
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diff changeset
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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6 ],
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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7 "analysis":0,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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8 "branch attributes":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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9 "0":{
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10 "BABOON":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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11 "General descriptive":0.001859562666773025,
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12 "MG94xREV with separate rates for branch sets":0.001729040005725717,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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diff changeset
13 "Nucleotide GTR":0.001685167654714891,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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diff changeset
14 "RELAX alternative":0.001434762988174167,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
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diff changeset
15 "RELAX null":0.001618077326700096,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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16 "RELAX partitioned descriptive":0.001426437398554912,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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17 "k (general descriptive)":0.09975760133237818,
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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18 "original name":"BABOON"
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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19 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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20 "CAT":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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21 "General descriptive":0.3649705108927348,
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22 "MG94xREV with separate rates for branch sets":0.2761191158060541,
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23 "Nucleotide GTR":0.2660536011315811,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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24 "RELAX alternative":0.3757111787573828,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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diff changeset
25 "RELAX null":0.360767755751942,
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iuc
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diff changeset
26 "RELAX partitioned descriptive":0.3768226672635935,
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iuc
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diff changeset
27 "k (general descriptive)":2.322824217601444,
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iuc
parents:
diff changeset
28 "original name":"CAT"
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iuc
parents:
diff changeset
29 },
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iuc
parents:
diff changeset
30 "CHIMP":{
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iuc
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diff changeset
31 "General descriptive":0.001848544328521468,
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iuc
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diff changeset
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iuc
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diff changeset
33 "Nucleotide GTR":0.001820258053351119,
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iuc
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diff changeset
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iuc
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diff changeset
35 "RELAX null":0.00185572990722179,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
38 "original name":"CHIMP"
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iuc
parents:
diff changeset
39 },
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iuc
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diff changeset
40 "COW":{
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
43 "Nucleotide GTR":0.2480198736772598,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
46 "RELAX partitioned descriptive":0.336296078659758,
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iuc
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diff changeset
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iuc
parents:
diff changeset
48 "original name":"COW"
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iuc
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diff changeset
49 },
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iuc
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50 "HORSE":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
56 "RELAX partitioned descriptive":0.26200095593742,
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iuc
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diff changeset
57 "k (general descriptive)":1.930891329212253,
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iuc
parents:
diff changeset
58 "original name":"HORSE"
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iuc
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diff changeset
59 },
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iuc
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diff changeset
60 "HUMAN":{
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iuc
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diff changeset
61 "General descriptive":0,
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iuc
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diff changeset
62 "MG94xREV with separate rates for branch sets":0,
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iuc
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diff changeset
63 "Nucleotide GTR":0,
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iuc
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diff changeset
64 "RELAX alternative":0,
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iuc
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diff changeset
65 "RELAX null":0,
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iuc
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iuc
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diff changeset
67 "k (general descriptive)":1.416548546052124,
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iuc
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diff changeset
68 "original name":"HUMAN"
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iuc
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diff changeset
69 },
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iuc
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diff changeset
70 "MOUSE":{
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iuc
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diff changeset
71 "General descriptive":0.1308803878257961,
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iuc
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diff changeset
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iuc
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diff changeset
73 "Nucleotide GTR":0.1181058300538561,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
76 "RELAX partitioned descriptive":0.1488950288407203,
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iuc
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diff changeset
77 "k (general descriptive)":0.4621316779775653,
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iuc
parents:
diff changeset
78 "original name":"MOUSE"
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iuc
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diff changeset
79 },
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iuc
parents:
diff changeset
80 "Node1":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
83 "Nucleotide GTR":0.2767105173979571,
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iuc
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diff changeset
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iuc
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diff changeset
85 "RELAX null":0.4545405634998693,
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iuc
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diff changeset
86 "RELAX partitioned descriptive":0.4297776151561553,
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iuc
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diff changeset
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iuc
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diff changeset
88 },
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iuc
parents:
diff changeset
89 "Node12":{
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iuc
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diff changeset
90 "General descriptive":0.01766178787800134,
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iuc
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diff changeset
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iuc
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diff changeset
92 "Nucleotide GTR":0.01784222107494562,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
95 "RELAX partitioned descriptive":0.01647240042293572,
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iuc
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diff changeset
96 "k (general descriptive)":0.124120594408151
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iuc
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diff changeset
97 },
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iuc
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diff changeset
98 "Node2":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
101 "Nucleotide GTR":0.06614755778044307,
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iuc
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diff changeset
102 "RELAX alternative":0.06487498265124983,
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iuc
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diff changeset
103 "RELAX null":0.06743647945583151,
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iuc
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diff changeset
104 "RELAX partitioned descriptive":0.06330449773182804,
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iuc
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diff changeset
105 "k (general descriptive)":0.5360768532731082
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iuc
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diff changeset
106 },
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iuc
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diff changeset
107 "Node3":{
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iuc
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diff changeset
108 "General descriptive":0.1330256319960288,
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iuc
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diff changeset
109 "MG94xREV with separate rates for branch sets":0.1003154990002797,
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iuc
parents: 2
diff changeset
110 "Nucleotide GTR":0.09883748387954429,
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iuc
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diff changeset
111 "RELAX alternative":0.1378173139909468,
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iuc
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diff changeset
112 "RELAX null":0.1387701954254672,
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iuc
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diff changeset
113 "RELAX partitioned descriptive":0.136719474302551,
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iuc
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diff changeset
114 "k (general descriptive)":1.981625732305646
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iuc
parents:
diff changeset
115 },
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diff changeset
116 "Node8":{
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diff changeset
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iuc
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diff changeset
119 "Nucleotide GTR":0.1062201244057951,
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iuc
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iuc
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diff changeset
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iuc
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iuc
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diff changeset
123 "k (general descriptive)":2.211998835217187
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iuc
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diff changeset
124 },
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iuc
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diff changeset
125 "Node9":{
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iuc
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diff changeset
128 "Nucleotide GTR":0.02567813733543303,
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iuc
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iuc
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diff changeset
130 "RELAX null":0.02953553824738531,
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iuc
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diff changeset
131 "RELAX partitioned descriptive":0.02996950192160838,
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iuc
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diff changeset
132 "k (general descriptive)":0.07343805012797726
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iuc
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diff changeset
133 },
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iuc
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diff changeset
134 "PIG":{
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iuc
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diff changeset
135 "General descriptive":0.2105401970679286,
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iuc
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diff changeset
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iuc
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diff changeset
137 "Nucleotide GTR":0.1871390433004313,
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iuc
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diff changeset
138 "RELAX alternative":0.2517917117490165,
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iuc
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diff changeset
139 "RELAX null":0.2483169436500481,
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iuc
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diff changeset
140 "RELAX partitioned descriptive":0.2506475053874151,
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iuc
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diff changeset
141 "k (general descriptive)":1.582105640200874,
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iuc
parents:
diff changeset
142 "original name":"PIG"
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iuc
parents:
diff changeset
143 },
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iuc
parents:
diff changeset
144 "RAT":{
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iuc
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diff changeset
145 "General descriptive":0.07158272879959397,
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iuc
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diff changeset
146 "MG94xREV with separate rates for branch sets":0.06831927364558048,
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iuc
parents: 2
diff changeset
147 "Nucleotide GTR":0.06661490534189227,
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iuc
parents: 2
diff changeset
148 "RELAX alternative":0.07311180317129368,
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iuc
parents: 2
diff changeset
149 "RELAX null":0.07112698282214641,
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iuc
parents: 2
diff changeset
150 "RELAX partitioned descriptive":0.07451416024404128,
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iuc
parents: 2
diff changeset
151 "k (general descriptive)":1.317928928374736,
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iuc
parents:
diff changeset
152 "original name":"RAT"
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iuc
parents:
diff changeset
153 },
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iuc
parents:
diff changeset
154 "RHMONKEY":{
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iuc
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diff changeset
155 "General descriptive":0.003673715052669516,
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iuc
parents: 2
diff changeset
156 "MG94xREV with separate rates for branch sets":0.003755247927570558,
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iuc
parents: 2
diff changeset
157 "Nucleotide GTR":0.003778804730491441,
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iuc
parents: 2
diff changeset
158 "RELAX alternative":0.004176749981889291,
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iuc
parents: 2
diff changeset
159 "RELAX null":0.00397871921631754,
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iuc
parents: 2
diff changeset
160 "RELAX partitioned descriptive":0.004188079354984015,
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iuc
parents: 2
diff changeset
161 "k (general descriptive)":5.301456309232226,
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iuc
parents:
diff changeset
162 "original name":"RHMONKEY"
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iuc
parents:
diff changeset
163 }
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iuc
parents:
diff changeset
164 },
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iuc
parents:
diff changeset
165 "attributes":{
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iuc
parents:
diff changeset
166 "General descriptive":{
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iuc
parents:
diff changeset
167 "attribute type":"branch length",
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iuc
parents:
diff changeset
168 "display order":4
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iuc
parents:
diff changeset
169 },
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iuc
parents:
diff changeset
170 "MG94xREV with separate rates for branch sets":{
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iuc
parents:
diff changeset
171 "attribute type":"branch length",
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iuc
parents:
diff changeset
172 "display order":1
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iuc
parents:
diff changeset
173 },
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iuc
parents:
diff changeset
174 "Nucleotide GTR":{
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iuc
parents:
diff changeset
175 "attribute type":"branch length",
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iuc
parents:
diff changeset
176 "display order":0
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iuc
parents:
diff changeset
177 },
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iuc
parents:
diff changeset
178 "RELAX alternative":{
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iuc
parents:
diff changeset
179 "attribute type":"branch length",
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iuc
parents:
diff changeset
180 "display order":2
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iuc
parents:
diff changeset
181 },
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iuc
parents:
diff changeset
182 "RELAX null":{
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iuc
parents:
diff changeset
183 "attribute type":"branch length",
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iuc
parents:
diff changeset
184 "display order":3
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iuc
parents:
diff changeset
185 },
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iuc
parents:
diff changeset
186 "RELAX partitioned descriptive":{
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iuc
parents:
diff changeset
187 "attribute type":"branch length",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
188 "display order":5
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
189 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
190 "k (general descriptive)":{
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iuc
parents:
diff changeset
191 "attribute type":"branch label",
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iuc
parents:
diff changeset
192 "display order":4
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iuc
parents:
diff changeset
193 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
194 "original name":{
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iuc
parents:
diff changeset
195 "attribute type":"node label",
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iuc
parents:
diff changeset
196 "display order":-1
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
197 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
198 }
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iuc
parents:
diff changeset
199 },
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iuc
parents:
diff changeset
200 "data partitions":{
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iuc
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diff changeset
201 "0":{
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iuc
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diff changeset
202 "coverage": [
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iuc
parents:
diff changeset
203 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186]
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
204 ],
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
205 "name":"relax.filter.default"
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
206 }
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iuc
parents:
diff changeset
207 },
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iuc
parents:
diff changeset
208 "fits":{
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iuc
parents:
diff changeset
209 "General descriptive":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
210 "AIC-c":6945.886057024934,
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iuc
parents: 2
diff changeset
211 "Log Likelihood":-3420.484282637879,
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
212 "Rate Distributions":{
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iuc
parents:
diff changeset
213 "Shared":{
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iuc
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diff changeset
214 "0":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
215 "omega":2.201373594751134e-18,
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iuc
parents: 2
diff changeset
216 "proportion":0.5258178735075876
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iuc
parents:
diff changeset
217 },
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iuc
parents:
diff changeset
218 "1":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
219 "omega":2.201373594751134e-18,
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iuc
parents: 2
diff changeset
220 "proportion":0.01992025780064184
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
221 },
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iuc
parents:
diff changeset
222 "2":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
223 "omega":2.201373412388544,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
224 "proportion":0.4542618686917706
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iuc
parents:
diff changeset
225 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
226 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
227 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
228 "display order":4,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
229 "estimated parameters":51
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
230 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
231 "MG94xREV with separate rates for branch sets":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
232 "AIC-c":6987.278076404838,
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iuc
parents:
diff changeset
233 "Equilibrium frequencies": [
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iuc
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diff changeset
234 [0.04876086397632926],
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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iuc
parents:
diff changeset
281 [0.01644767379420349],
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iuc
parents:
diff changeset
282 [0.01965132601881859],
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iuc
parents:
diff changeset
283 [0.02049322866376102],
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iuc
parents:
diff changeset
284 [0.008933621043463411],
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iuc
parents:
diff changeset
285 [0.007295949736387736],
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iuc
parents:
diff changeset
286 [0.009068296583349953],
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iuc
parents:
diff changeset
287 [0.007608523013862737],
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iuc
parents:
diff changeset
288 [0.007628698224327205],
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iuc
parents:
diff changeset
289 [0.009481877006094248],
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iuc
parents:
diff changeset
290 [0.00795552712159237],
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iuc
parents:
diff changeset
291 [0.01396413011303752],
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iuc
parents:
diff changeset
292 [0.01140428846505027],
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iuc
parents:
diff changeset
293 [0.01417464125436193],
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iuc
parents:
diff changeset
294 [0.01189287130232129]
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iuc
parents:
diff changeset
295 ],
9
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iuc
parents: 2
diff changeset
296 "Log Likelihood":-3461.064187903018,
2
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iuc
parents:
diff changeset
297 "Rate Distributions":{
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iuc
parents:
diff changeset
298 "non-synonymous/synonymous rate ratio for *Reference*": [
9
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iuc
parents: 2
diff changeset
299 [1.243401858007084, 1]
2
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iuc
parents:
diff changeset
300 ],
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iuc
parents:
diff changeset
301 "non-synonymous/synonymous rate ratio for *Test*": [
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
302 [0.5612874934764923, 1]
2
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iuc
parents:
diff changeset
303 ]
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iuc
parents:
diff changeset
304 },
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iuc
parents:
diff changeset
305 "display order":1,
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iuc
parents:
diff changeset
306 "estimated parameters":32
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iuc
parents:
diff changeset
307 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
308 "Nucleotide GTR":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
309 "AIC-c":7112.857288723968,
2
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iuc
parents:
diff changeset
310 "Equilibrium frequencies": [
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iuc
parents:
diff changeset
311 [0.3592490842490842],
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iuc
parents:
diff changeset
312 [0.181959706959707],
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iuc
parents:
diff changeset
313 [0.240018315018315],
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iuc
parents:
diff changeset
314 [0.2187728937728937]
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iuc
parents:
diff changeset
315 ],
9
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iuc
parents: 2
diff changeset
316 "Log Likelihood":-3532.321213744258,
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
317 "Rate Distributions":{
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iuc
parents:
diff changeset
318 "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
319 "Substitution rate from nucleotide A to nucleotide G":1,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
320 "Substitution rate from nucleotide A to nucleotide T":0.2646800222727828,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
321 "Substitution rate from nucleotide C to nucleotide G":0.4918071762416347,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
322 "Substitution rate from nucleotide C to nucleotide T":1.028675134787727,
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iuc
parents: 2
diff changeset
323 "Substitution rate from nucleotide G to nucleotide T":0.3045013055839741
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
324 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
325 "display order":0,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
326 "estimated parameters":24
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iuc
parents:
diff changeset
327 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
328 "RELAX alternative":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
329 "AIC-c":6909.668413948684,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
330 "Log Likelihood":-3408.69933855329,
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
331 "Rate Distributions":{
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iuc
parents:
diff changeset
332 "Reference":{
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iuc
parents:
diff changeset
333 "0":{
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iuc
parents:
diff changeset
334 "omega":0,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
335 "proportion":0.3825895192221547
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
336 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
337 "1":{
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iuc
parents: 2
diff changeset
338 "omega":0.003503464580598538,
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
339 "proportion":0
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iuc
parents:
diff changeset
340 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
341 "2":{
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iuc
parents: 2
diff changeset
342 "omega":2.417572962231385,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
343 "proportion":0.6174104807778453
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
344 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
345 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
346 "Synonymous site-to-site rates":{
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iuc
parents:
diff changeset
347 "0":{
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iuc
parents: 2
diff changeset
348 "proportion":0.2789425737851868,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
349 "rate":0.2834765074731829
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
350 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
351 "1":{
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iuc
parents: 2
diff changeset
352 "proportion":0.6311785441975573,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
353 "rate":0.9970973177052372
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
354 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
355 "2":{
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iuc
parents: 2
diff changeset
356 "proportion":0.089878882017256,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
357 "rate":3.244142488658602
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
358 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
359 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
360 "Test":{
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iuc
parents:
diff changeset
361 "0":{
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iuc
parents:
diff changeset
362 "omega":0,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
363 "proportion":0.3825895192221547
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
364 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
365 "1":{
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
366 "omega":0.9998114377116485,
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
367 "proportion":0
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
368 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
369 "2":{
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iuc
parents: 2
diff changeset
370 "omega":1.000029443594731,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
371 "proportion":0.6174104807778453
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
372 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
373 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
374 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
375 "display order":2,
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
376 "estimated parameters":45
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
377 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
378 "RELAX null":{
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iuc
parents: 2
diff changeset
379 "AIC-c":6919.152853316747,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
380 "Log Likelihood":-3414.491495151524,
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
381 "Rate Distributions":{
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iuc
parents:
diff changeset
382 "Reference":{
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iuc
parents:
diff changeset
383 "0":{
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iuc
parents:
diff changeset
384 "omega":0,
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
385 "proportion":0.3885051761591228
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
386 },
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iuc
parents:
diff changeset
387 "1":{
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iuc
parents: 2
diff changeset
388 "omega":0.9958737025997172,
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iuc
parents: 2
diff changeset
389 "proportion":0
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
390 },
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iuc
parents:
diff changeset
391 "2":{
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iuc
parents: 2
diff changeset
392 "omega":1.887643080900262,
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iuc
parents: 2
diff changeset
393 "proportion":0.6114948238408772
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
394 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
395 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
396 "Synonymous site-to-site rates":{
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iuc
parents:
diff changeset
397 "0":{
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iuc
parents: 2
diff changeset
398 "proportion":0.2642938080646302,
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iuc
parents: 2
diff changeset
399 "rate":0.2741590488311177
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
400 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
401 "1":{
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iuc
parents: 2
diff changeset
402 "proportion":0.633162055223991,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
403 "rate":0.9728788992663913
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
404 },
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iuc
parents:
diff changeset
405 "2":{
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iuc
parents: 2
diff changeset
406 "proportion":0.1025441367113787,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
407 "rate":3.038218152856258
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
408 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
409 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
410 "Test":{
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iuc
parents:
diff changeset
411 "0":{
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iuc
parents:
diff changeset
412 "omega":0,
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
413 "proportion":0.3885051761591228
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
414 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
415 "1":{
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iuc
parents: 2
diff changeset
416 "omega":0.9958737025997172,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
417 "proportion":0
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
418 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
419 "2":{
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iuc
parents: 2
diff changeset
420 "omega":1.887643080900262,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
421 "proportion":0.6114948238408772
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
422 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
423 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
424 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
425 "display order":3,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
426 "estimated parameters":44
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
427 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
428 "RELAX partitioned descriptive":{
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iuc
parents: 2
diff changeset
429 "AIC-c":6917.810941882631,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
430 "Log Likelihood":-3408.559317095162,
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
431 "Rate Distributions":{
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iuc
parents:
diff changeset
432 "Reference":{
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iuc
parents:
diff changeset
433 "0":{
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iuc
parents: 2
diff changeset
434 "omega":0.03550460650841439,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
435 "proportion":0.354985198548996
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
436 },
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iuc
parents:
diff changeset
437 "1":{
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iuc
parents: 2
diff changeset
438 "omega":0.05439939847728128,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
439 "proportion":0.02231130867735708
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
440 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
441 "2":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
442 "omega":2.333762420535514,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
443 "proportion":0.6227034927736469
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
444 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
445 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
446 "Test":{
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iuc
parents:
diff changeset
447 "0":{
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iuc
parents:
diff changeset
448 "omega":0,
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
449 "proportion":0.3705590531463396
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
450 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
451 "1":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
452 "omega":0,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
453 "proportion":0.06265340406614885
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
454 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
455 "2":{
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e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
456 "omega":1.08372848194659,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
457 "proportion":0.5667875427875115
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
458 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
459 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
460 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
461 "display order":5,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
462 "estimated parameters":49
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
463 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
464 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
465 "input":{
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
466 "file name":"/tmp/tmpkgsdjj1d/job_working_directory/000/5/working/./input.nex",
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
467 "number of sequences":10,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
468 "number of sites":187,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
469 "partition count":1,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
470 "trees":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
471 "0":"((((PIG:0.147969,COW:0.21343)Node3:0.08509899999999999,HORSE:0.165787,CAT:0.264806)Node2:0.058611,((RHMONKEY:0.002015,BABOON:0.003108)Node9:0.022733,(HUMAN:0.004349,CHIMP:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,RAT:0.050958,MOUSE:0.09795)"
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
472 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
473 },
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
474 "runtime":"2.5.32",
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
475 "test results":{
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
476 "LRT":11.58431319646934,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
477 "p-value":0.0006651049394417186,
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
478 "relaxation or intensification parameter":3.335337302186161e-05
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
479 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
480 "tested":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
481 "0":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
482 "BABOON":"Test",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
483 "CAT":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
484 "CHIMP":"Test",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
485 "COW":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
486 "HORSE":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
487 "HUMAN":"Test",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
488 "MOUSE":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
489 "Node1":"Test",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
490 "Node12":"Test",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
491 "Node2":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
492 "Node3":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
493 "Node8":"Test",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
494 "Node9":"Test",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
495 "PIG":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
496 "RAT":"Reference",
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
497 "RHMONKEY":"Test"
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
498 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
499 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
500 "timers":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
501 "General descriptive model fitting":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
502 "order":2,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
503 "timer":105
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
504 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
505 "Overall":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
506 "order":0,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
507 "timer":3013
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
508 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
509 "Preliminary model fitting":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
510 "order":1,
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
511 "timer":8
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
512 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
513 "RELAX alternative model fitting":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
514 "order":3,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
515 "timer":1229
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
516 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
517 "RELAX null model fitting":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
518 "order":4,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
519 "timer":690
2
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
520 },
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
521 "RELAX partitioned descriptive":{
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
522 "order":5,
9
e6009f23582c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 2
diff changeset
523 "timer":980
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a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
524 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
525 }
a88848771d2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
526 }