comparison test-data/gard-in1.fa @ 0:df56795c3d89 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
author iuc
date Tue, 20 Apr 2021 10:29:30 +0000
parents
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comparison
equal deleted inserted replaced
-1:000000000000 0:df56795c3d89
1 >BRO1_1
2 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
3 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
4 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
5 CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
6 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
7 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
8 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
9 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
10 CAGAT-AGGGGTCCCTTGACCACCATCC
11 >BRO2
12 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
13 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
14 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
15 CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
16 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
17 CAACTGCAACCCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
18 CTACCCACCC-TTAACAGTACATAGTGCATAAAGCCATTTACCGTACATA
19 GCACATTATA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
20 CAGAT-AGGGGTCCCTTGACCACCATCC
21 >BRO3_1
22 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
23 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
24 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
25 CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
26 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
27 CAGCTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
28 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
29 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
30 CAGAT-AGGGGTCCCTTGACCACCATCC
31 >BRO4
32 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
33 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
34 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
35 CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
36 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCATACAT
37 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
38 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
39 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
40 CAGAT-AGGGGTCCCTTGACCACCATCC
41 >BRO5
42 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
43 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
44 ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC
45 CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC
46 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
47 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
48 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
49 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
50 CAGAT-AGGGGTCCCTTGACCACCATCC
51 >BRO6
52 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
53 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
54 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
55 CACCTGTAATACATAAAAACCC-AATTC--ACACCAAAA----CCCCCCC
56 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
57 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
58 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
59 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
60 CAGAT-AGGGGTCCCTTGACCACCATCC
61 >BRO7_1
62 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
63 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
64 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
65 CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC
66 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
67 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
68 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
69 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
70 CAGAT-AGGGGTCCCTTGACCACCATCC
71 >BRO8
72 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
73 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
74 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
75 CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
76 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
77 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGAATACCAACAAAC
78 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
79 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
80 CAGAT-AGGGGTCCCTTGACCACCATCC
81 >BRO9
82 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
83 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
84 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
85 CACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCCCCC
86 CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
87 CAATTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
88 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
89 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
90 CAGAT-AGGGGTCCCTTGACCACCATCC
91 >BRO10
92 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
93 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
94 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
95 CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
96 CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT
97 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
98 CTACCCACCC-TTAACAGTACATAGCACATAAAGCCATTTATCGTACATA
99 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
100 CAGAT-AGGGGTCCCTTGACCACCATCC
101 >BRO11_1
102 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
103 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
104 ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
105 TACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCTGCC
106 CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTGTCACACAT
107 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
108 CTACCCACCC-TTAACAGTACATAGCACATAAAGTCATTTACCGTACATA
109 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
110 CAGAT-AGGGGTCCCTTGACCACCATCC
111 >BRO12
112 ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
113 TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
114 ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC
115 TACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCTC
116 CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT
117 CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
118 CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
119 GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
120 CAGAT-AGGGGTCCCTTGACCACCATCC