Mercurial > repos > iuc > hyphy_annotate

diff test-data/summary/ORF6.FADE.json @ 3:1669328e2ab1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
author: iuc
date: Wed, 09 Jun 2021 06:59:09 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summary/ORF6.FADE.json	Wed Jun 09 06:59:09 2021 +0000
@@ -0,0 +1,3142 @@
+{
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+   "headers":    [
+["rate", "Mean posterior relative rate at a site"],
+    ["bias", "Mean posterior bias parameter at a site"],
+    ["Prob[bias>0]", "Posterior probability of substitution bias"],
+    ["BayesFactor[bias>0]", "Empiricial Bayes Factor for substitution bias"] 
+    ]
+  },
+ "analysis":{
+   "authors":"Sergei L Kosakovsky Pond",
+   "citation":"TBD",
+   "contact":"spond@temple.edu",
+   "info":"FADE (FUBAR Approach to Directional Evolution) is a fast method to test whether or not a subset of sites in a protein alignment\n                            evolve towards a particular residue along a subset of branches at accelerated rates compared to reference model.\n                            FADE uses a random effects model and latent Dirichlet allocation (LDA) - inspired approximation methods to allocate sites to rate classes.",
+   "requirements":"A protein alignment and a **rooted** phylogenetic tree (optionally annotated with {})",
+   "version":"0.2"
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T_HUMAN,GB_MW206535_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1865_2020_SEGMENT_NULL_HOST_HUMAN)Node342)Node336,((GB_MW583265_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CDC_STM_000001669_2021_SEGMENT_NULL_HOST_HUMAN,GB_MT969697_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC2890_2020_SEGMENT_NULL_HOST_HUMAN)Node346,(GB_MW555931_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S3980_2021_SEGMENT_NULL_HOST_HUMAN,GB_MW566557_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_TX_QDX_4471_2020_SEGMENT_NULL_HOST_HUMAN)Node349)Node345)Node335)Node327)Node1,REFERENCE)"
+    }
+  },
+ "settings":{
+   "bayes factor":100,
+   "burn-in":1000000,
+   "chain-length":2000000,
+   "chains":1,
+   "concentration":0.5,
+   "grid size":20,
+   "method":"Variational-Bayes",
+   "samples":100
+  },
+ "site annotations":{
+   "headers":{
+     "Composition":"Amino acid composition of site",
+     "Substitutions":"Substitution history on selected branches"
+    },
+   "site annotations":{
+     "0":      [
+["M12", ""],
+      ["F12", ""],
+      ["H12", ""],
+      ["L12", ""],
+      ["V12", ""],
+      ["D11,G1", "D->G(1)"],
+      ["F12", ""],
+      ["H1,Q11", "Q->H(1)"],
+      ["V12", ""],
+      ["T12", ""],
+      ["I12", ""],
+      ["A12", ""],
+      ["E12", ""],
+      ["I12", ""],
+      ["L12", ""],
+      ["L12", ""],
+      ["I12", ""],
+      ["I12", ""],
+      ["M12", ""],
+      ["K1,R10,S1", "R->K(1)S(1)"],
+      ["T12", ""],
+      ["F12", ""],
+      ["K12", ""],
+      ["F1,V11", "V->F(1)"],
+      ["S12", ""],
+      ["I12", ""],
+      ["W12", ""],
+      ["N12", ""],
+      ["L12", ""],
+      ["D12", ""],
+      ["Y12", ""],
+      ["I12", ""],
+      ["I11,T1", ""],
+      ["N12", ""],
+      ["L12", ""],
+      ["I12", ""],
+      ["I12", ""],
+      ["K12", ""],
+      ["N12", ""],
+      ["L12", ""],
+      ["F1,S11", "C->F(1)"],
+      ["K12", ""],
+      ["S12", ""],
+      ["L12", ""],
+      ["T12", ""],
+      ["E12", ""],
+      ["N12", ""],
+      ["K12", ""],
+      ["Y12", ""],
+      ["S12", ""],
+      ["Q12", ""],
+      ["L12", ""],
+      ["D12", ""],
+      ["E12", ""],
+      ["E12", ""],
+      ["Q12", ""],
+      ["L1,P11", "P->L(1)"],
+      ["M12", ""],
+      ["E12", ""],
+      ["I12", ""],
+      ["C1,D11", "Y->C(1)"] 
+      ]
+    }
+  },
+ "tested":{
+   "0":{
+     "EPI_ISL_1181694_HCOV_19_USA_DE_DHSS_B1064373_2021":"test",
+     "EPI_ISL_1284652_HCOV_19_GERMANY_SN_RKI_I_038291_2021":"test",
+     "EPI_ISL_1442952_HCOV_19_SINGAPORE_321_2021":"test",
+     "EPI_ISL_1470937_HCOV_19_USA_NY_PRL_2021_03_29_01C17_2021":"test",
+     "EPI_ISL_1512225_HCOV_19_USA_GA_CDC_STM_000041012_2021":"test",
+     "EPI_ISL_1516887_HCOV_19_AUSTRALIA_QLD1826_2021":"test",
+     "EPI_ISL_1533793_HCOV_19_INDIA_MH_NCCS_CHN21027888_2021":"test",
+     "EPI_ISL_1533799_HCOV_19_INDIA_MH_NCCS_9947_2021":"test",
+     "EPI_ISL_1543980_HCOV_19_SINGAPORE_490_2021":"test",
+     "EPI_ISL_1589923_HCOV_19_INDIA_WB_1930300571091_2021":"test",
+     "EPI_ISL_1589926_HCOV_19_INDIA_WB_1930300586246_2021":"test",
+     "EPI_ISL_1631286_HCOV_19_ENGLAND_CAMC_14E7527_2021":"test",
+     "GB_LC571023_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_DP0724_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT326182_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CT_UW_1365_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT358638_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_DEU_FFM1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT359866_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_ESP_VH198152683_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT447156_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_THA_SI200383_NT_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT449654_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1063_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT451104_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC203_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT520188_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MA_MGH_00184_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT520493_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MA_MGH_00316_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT601276_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_52_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT601281_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_67_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT612186_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC1576_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT627613_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S260_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT631787_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1651_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT641697_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC595_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT683417_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_UW_10131_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT706153_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_UW_32_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT745697_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC2124_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT745746_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_SA01_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT750335_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1794_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT772447_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IL_UW_670_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT782360_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_04172_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT811295_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_SEARCH_0657_IPL_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT811511_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_SEARCH_1079_SAN_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT811669_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_SEARCH_0155_NBG_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT825091_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IRN_COVID19_IRVSH1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT834049_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S1626_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT847221_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_283_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT860680_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_DNAS_DRICM_ISL_MH_09_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT873189_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MA_DPH_00301_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT890240_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_GHA_2709_S25_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT913013_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_DNAS_DRICM_ISL_SHARMIN_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT940460_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IND_GBRC331_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT940472_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IND_GBRC334A_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT946870_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S2716_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT969697_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC2890_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MT973414_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_TAS83_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW035934_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_2214_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW047313_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WRCEVA_000509_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW056168_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1521_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW064840_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MI_QDX_825_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW064863_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_QDX_779_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW093451_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_TX_DSHS_0533_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW134116_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_3258_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW134227_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_3762_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW154346_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC7465_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW154411_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC6964_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW155278_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC12385_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW155387_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13741_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW155642_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13394_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW155738_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC11358_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW155761_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC10624_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW156645_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC11076_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW156732_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC10631_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW156840_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC11409_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW156971_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC10203_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW157056_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC11469_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW181508_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_201017695_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW181734_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HOMO_SAPIENS_HKG_CASE5054_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW181739_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HOMO_SAPIENS_HKG_CASE5119_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW190571_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_QDX_1809_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW193966_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IND_NIMH_12171_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW206535_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1865_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW208032_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_1590_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW243997_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0302_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW244002_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0307_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW265628_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_201129040_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW277035_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC16243_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW295643_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_TUN_TUN_202058412_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW306356_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_12795_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW321239_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC17424_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW321253_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC17363_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW332559_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BHR_341036734_S5_L001_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW341989_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_UW_2124_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW375980_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_201216229_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW406537_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IN_CDC_2_3693679_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW420890_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_NMDOH_2020316507_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW433771_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_LACPHL_AF00076_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW435625_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_TX_DSHS_1968_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW447630_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_PAK_JRCGR_KHI15_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW452545_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_TUN_TUN_ADAGE_T_15425_20_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW462661_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MN_MDH_2263_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW467476_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_EGY_EGY_CCHE57357_A_71_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW467498_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_EGY_EGY_CCHE57357_P_32_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW474247_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S3080_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW483544_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_13396_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW483548_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_13407_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW486406_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_UW_2638_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW490743_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_2463_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW490862_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_2441_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW490888_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_2295_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW490946_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_2353_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW491211_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_2755_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW493999_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S3367_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW494387_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_NH_CDC_STM_A100009_2021_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW505295_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_TX_QDX_3142_2021_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW509810_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_EGY_CUNCI_HGC11I035_2021_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW518151_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IN_CDC_STM_A008_2021_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW519641_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CT_CDC_STM_A100453_2021_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW519702_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IN_CDC_STM_A100466_2021_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW519849_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_PA_CDC_STM_A100104_2021_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW521749_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_NV_QDX_3543_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW521810_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_TX_QDX_3530_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW523039_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_GA_GPHL_0001_2020_SEGMENT_NULL_HOST_HUMAN":"background",
+     "GB_MW524907_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_RI_CDC_STM_0000013_C05_2021_SEGMENT_NULL_HOST_HUMAN":"background",
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+}
\ No newline at end of file