Mercurial > repos > iuc > hyphy_annotate
diff hyphy_annotate.xml @ 4:f7810488bd92 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2063bc1f8f9cb97de147b86dbe9189fc496b206a"
| author | iuc |
|---|---|
| date | Wed, 09 Jun 2021 17:25:00 +0000 |
| parents | a88848771d2d |
| children | fa913c2975da |
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--- a/hyphy_annotate.xml Wed Jun 09 06:59:09 2021 +0000 +++ b/hyphy_annotate.xml Wed Jun 09 17:25:00 2021 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hyphy_annotate" name="Annotate" version="@VERSION@"> +<tool id="hyphy_annotate" name="Annotate" version="@VERSION@+galaxy0"> <description>a newick tree with HyPhy</description> <macros> <import>macros.xml</import> @@ -10,7 +10,7 @@ cp '$compressed_msa' input.$compressed_msa.extension && cp '$__tool_directory__/scripts/annotator.bf' annotator.bf && hyphy annotator.bf - input.nhx '$root' input.$compressed_msa.extension '$label' labeled_tree. + input.nhx '$root' input.$compressed_msa.extension '$label' labeled_tree_ @ERRORS@ ]]></command> <inputs> @@ -20,9 +20,10 @@ <param name="label" type="text" optional="false" value="Tree" label="Label for tree" /> </inputs> <outputs> - <data name="labeled_tree_int" format="nhx" from_work_dir="labeled_tree.int.nwk" label="Labeled tree (int)" /> - <data name="labeled_tree_clade" format="nhx" from_work_dir="labeled_tree.clade.nwk" label="Labeled tree (clade)" /> - <data name="labeled_tree_full" format="nhx" from_work_dir="labeled_tree.full.nwk" label="Labeled tree (full)" /> + <data name="labeled_tree_int" format="nhx" from_work_dir="labeled_tree_int.nwk" label="${tool.name} on ${on_string} Labeled tree (int)" /> + <data name="labeled_tree_clade" format="nhx" from_work_dir="labeled_tree_clade.nwk" label="${tool.name} on ${on_string} Labeled tree (clade)" /> + <data name="labeled_tree_full" format="nhx" from_work_dir="labeled_tree_full.nwk" label="${tool.name} on ${on_string} Labeled tree (full)" /> + <data name="labeled_tree_json" format="hyphy_results.json" from_work_dir="labeled_tree_labels.json" label="${tool.name} on ${on_string} Labels" /> </outputs> <tests> <test> @@ -34,6 +35,7 @@ <output name="labeled_tree_int" file="annotate-out1-int.nhx" /> <output name="labeled_tree_full" file="annotate-out1-full.nhx" /> <output name="labeled_tree_clade" file="annotate-out1-clade.nhx" /> + <output name="labeled_tree_json" file="annotate-out1.json" /> </test> </tests> <help><![CDATA[