Mercurial > repos > iuc > hyphy_bgm

annotate test-data/meme-out1.json @ 19:cebcce34d63b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 22226cfa6cd1eaf04b0a77f4b3a0a9d38430df00"
author iuc
date Thu, 07 Jan 2021 23:20:44 +0000
parents 823a5afee916
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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571 ]
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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572 },
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573 "headers": [
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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574 ["alpha;", "Synonymous substitution rate at a site"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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575 ["&beta;<sup>-</sup>", "Non-synonymous substitution rate at a site for the negative/neutral evolution component"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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576 ["p<sup>-</sup>", "Mixture distribution weight allocated to &beta;<sup>-</sup>; loosely -- the proportion of the tree evolving neutrally or under negative selection"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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577 ["&beta;<sup>+</sup>", "Non-synonymous substitution rate at a site for the positive/neutral evolution component"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
578 ["p<sup>+</sup>", "Mixture distribution weight allocated to &beta;<sup>+</sup>; loosely -- the proportion of the tree evolving neutrally or under positive selection"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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579 ["LRT", "Likelihood ratio test statistic for episodic diversification, i.e., p<sup>+</sup> &gt; 0 <emph>and<emph> &beta;<sup>+</sup> &gt; &alpha;"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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580 ["p-value", "Asymptotic p-value for episodic diversification, i.e., p<sup>+</sup> &gt; 0 <emph>and<emph> &beta;<sup>+</sup> &gt; &alpha;"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
581 ["# branches under selection", "The (very approximate and rough) estimate of how many branches may have been under selection at this site, i.e., had an empirical Bayes factor of 100 or more for the &beta;<sup>+</sup> rate"],
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
582 ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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583 ]
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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584 },
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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585 "analysis":{
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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586 "authors":"Sergei L. Kosakovsky Pond, Steven Weaver",
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
587 "citation":"Detecting Individual Sites Subject to Episodic Diversifying Selection. _PLoS Genet_ 8(7): e1002764.",
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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588 "contact":"spond@temple.edu",
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
589 "info":"MEME (Mixed Effects Model of Evolution)\n estimates a site-wise synonymous (&alpha;) and a two-category mixture of non-synonymous\n (&beta;-, with proportion p-, and &beta;+ with proportion [1-p-]) rates, and\n uses a likelihood ratio test to determine if &beta;+ > &alpha; at a site.\n The estimates aggregate information over a proportion of branches at a site,\n so the signal is derived from\n episodic diversification, which is a combination of strength of selection [effect size] and\n the proportion of the tree affected. A subset of branches can be selected\n for testing as well, in which case an additional (nuisance) parameter will be\n inferred -- the non-synonymous rate on branches NOT selected for testing. Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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590 "requirements":"in-frame codon alignment and a phylogenetic tree",
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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591 "version":"2.1.1"
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592 },
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593 "branch attributes":{
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594 "0":{
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595 "CHICKEN_CK_160_2005":{
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596 "EBF site 100 (partition 1)":1,
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597 "EBF site 102 (partition 1)":0.4618577742407079,
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598 "EBF site 104 (partition 1)":1,
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603 "EBF site 12 (partition 1)":1,
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604 "EBF site 136 (partition 1)":1,
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617 "EBF site 170 (partition 1)":1,
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618 "EBF site 171 (partition 1)":1,
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620 "EBF site 175 (partition 1)":1,
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622 "EBF site 181 (partition 1)":1,
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625 "EBF site 200 (partition 1)":1,
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626 "EBF site 204 (partition 1)":1,
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628 "EBF site 209 (partition 1)":1,
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630 "EBF site 213 (partition 1)":1,
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632 "EBF site 228 (partition 1)":1,
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633 "EBF site 237 (partition 1)":1,
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634 "EBF site 241 (partition 1)":1,
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635 "EBF site 250 (partition 1)":1,
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636 "EBF site 254 (partition 1)":1,
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637 "EBF site 256 (partition 1)":1,
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638 "EBF site 258 (partition 1)":1,
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639 "EBF site 278 (partition 1)":1,
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640 "EBF site 279 (partition 1)":1,
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642 "EBF site 288 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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645 "EBF site 302 (partition 1)":1,
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646 "EBF site 304 (partition 1)":1,
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647 "EBF site 306 (partition 1)":1,
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648 "EBF site 309 (partition 1)":1,
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649 "EBF site 312 (partition 1)":1,
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650 "EBF site 315 (partition 1)":1,
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651 "EBF site 327 (partition 1)":1,
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652 "EBF site 329 (partition 1)":1,
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653 "EBF site 332 (partition 1)":1,
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654 "EBF site 336 (partition 1)":0.03271648327333754,
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655 "EBF site 341 (partition 1)":17.26943047780464,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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656 "EBF site 342 (partition 1)":1,
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657 "EBF site 348 (partition 1)":1,
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658 "EBF site 351 (partition 1)":1,
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659 "EBF site 353 (partition 1)":1,
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660 "EBF site 354 (partition 1)":1,
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661 "EBF site 361 (partition 1)":1,
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662 "EBF site 362 (partition 1)":1,
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663 "EBF site 369 (partition 1)":1,
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664 "EBF site 379 (partition 1)":1,
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665 "EBF site 389 (partition 1)":1,
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666 "EBF site 417 (partition 1)":1,
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667 "EBF site 424 (partition 1)":1,
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668 "EBF site 431 (partition 1)":1,
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670 "EBF site 441 (partition 1)":1,
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671 "EBF site 445 (partition 1)":1,
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672 "EBF site 45 (partition 1)":1,
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673 "EBF site 466 (partition 1)":1,
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674 "EBF site 477 (partition 1)":1,
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675 "EBF site 488 (partition 1)":1,
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676 "EBF site 489 (partition 1)":1,
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677 "EBF site 499 (partition 1)":1,
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678 "EBF site 50 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
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679 "EBF site 506 (partition 1)":0.6145034828797277,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
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680 "EBF site 509 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
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681 "EBF site 515 (partition 1)":0.1518467497901648,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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682 "EBF site 52 (partition 1)":1,
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diff changeset
705 "Nucleotide GTR":0.006373291987009584,
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diff changeset
706 "original name":"CHICKEN_CK_160_2005"
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diff changeset
707 },
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713 "EBF site 112 (partition 1)":1,
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717 "EBF site 136 (partition 1)":1,
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722 "EBF site 152 (partition 1)":1,
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725 "EBF site 155 (partition 1)":1,
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726 "EBF site 156 (partition 1)":1,
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727 "EBF site 157 (partition 1)":1,
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diff changeset
728 "EBF site 16 (partition 1)":0.7844317844147759,
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729 "EBF site 167 (partition 1)":0.0798862423565137,
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730 "EBF site 170 (partition 1)":1,
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731 "EBF site 171 (partition 1)":1,
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732 "EBF site 172 (partition 1)":1,
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735 "EBF site 181 (partition 1)":1,
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736 "EBF site 196 (partition 1)":1,
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737 "EBF site 197 (partition 1)":1,
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738 "EBF site 200 (partition 1)":1,
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739 "EBF site 204 (partition 1)":1,
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740 "EBF site 206 (partition 1)":1,
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741 "EBF site 209 (partition 1)":1,
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743 "EBF site 213 (partition 1)":1,
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744 "EBF site 217 (partition 1)":1,
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745 "EBF site 228 (partition 1)":1,
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750 "EBF site 256 (partition 1)":1,
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759 "EBF site 304 (partition 1)":1,
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760 "EBF site 306 (partition 1)":1,
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761 "EBF site 309 (partition 1)":1,
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762 "EBF site 312 (partition 1)":1,
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763 "EBF site 315 (partition 1)":1,
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765 "EBF site 329 (partition 1)":1,
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771 "EBF site 351 (partition 1)":1,
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801 "EBF site 549 (partition 1)":1,
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802 "EBF site 553 (partition 1)":1,
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804 "EBF site 560 (partition 1)":1,
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818 "Nucleotide GTR":0.02374038722405768,
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820 },
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830 "EBF site 136 (partition 1)":1,
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parents:
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838 "EBF site 155 (partition 1)":1,
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840 "EBF site 157 (partition 1)":1,
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842 "EBF site 167 (partition 1)":0.2316419784994734,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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843 "EBF site 170 (partition 1)":1,
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844 "EBF site 171 (partition 1)":1,
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846 "EBF site 175 (partition 1)":1,
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847 "EBF site 178 (partition 1)":0.4434509641896167,
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848 "EBF site 181 (partition 1)":1,
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diff changeset
850 "EBF site 197 (partition 1)":1,
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856 "EBF site 213 (partition 1)":1,
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857 "EBF site 217 (partition 1)":1,
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863 "EBF site 256 (partition 1)":1,
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878 "EBF site 329 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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882 "EBF site 342 (partition 1)":1,
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883 "EBF site 348 (partition 1)":1,
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884 "EBF site 351 (partition 1)":1,
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885 "EBF site 353 (partition 1)":1,
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886 "EBF site 354 (partition 1)":1,
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887 "EBF site 361 (partition 1)":1,
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888 "EBF site 362 (partition 1)":1,
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889 "EBF site 369 (partition 1)":1,
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891 "EBF site 389 (partition 1)":1,
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892 "EBF site 417 (partition 1)":1,
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893 "EBF site 424 (partition 1)":1,
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894 "EBF site 431 (partition 1)":1,
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896 "EBF site 441 (partition 1)":1,
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897 "EBF site 445 (partition 1)":1,
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898 "EBF site 45 (partition 1)":1,
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900 "EBF site 477 (partition 1)":1,
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901 "EBF site 488 (partition 1)":1,
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902 "EBF site 489 (partition 1)":1,
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903 "EBF site 499 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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906 "EBF site 509 (partition 1)":1,
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907 "EBF site 515 (partition 1)":0.1910366212508817,
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908 "EBF site 52 (partition 1)":1,
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909 "EBF site 527 (partition 1)":1,
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910 "EBF site 529 (partition 1)":1,
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911 "EBF site 537 (partition 1)":1,
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912 "EBF site 539 (partition 1)":1,
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913 "EBF site 545 (partition 1)":1,
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914 "EBF site 549 (partition 1)":1,
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915 "EBF site 553 (partition 1)":1,
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916 "EBF site 558 (partition 1)":0.7477909368736397,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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917 "EBF site 560 (partition 1)":1,
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918 "EBF site 564 (partition 1)":1,
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919 "EBF site 58 (partition 1)":1,
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920 "EBF site 59 (partition 1)":1,
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parents:
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921 "EBF site 60 (partition 1)":1,
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924 "EBF site 78 (partition 1)":1,
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925 "EBF site 79 (partition 1)":1,
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930 "Global MG94xREV":0.00642299379534039,
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diff changeset
931 "Nucleotide GTR":0.006310687609704974,
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parents: 0
diff changeset
932 "original name":"CK_HK_WF157_2003"
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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933 },
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parents: 0
diff changeset
934 "MALLARD_VIETNAM_16_2003":{
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951 "EBF site 155 (partition 1)":1,
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952 "EBF site 156 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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956 "EBF site 170 (partition 1)":1,
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957 "EBF site 171 (partition 1)":1,
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958 "EBF site 172 (partition 1)":1,
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969 "EBF site 213 (partition 1)":1,
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991 "EBF site 329 (partition 1)":1,
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994 "EBF site 341 (partition 1)":0.9267356920944968,
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995 "EBF site 342 (partition 1)":1,
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996 "EBF site 348 (partition 1)":1,
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997 "EBF site 351 (partition 1)":1,
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998 "EBF site 353 (partition 1)":1,
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1000 "EBF site 361 (partition 1)":1,
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1001 "EBF site 362 (partition 1)":1,
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1002 "EBF site 369 (partition 1)":1,
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1004 "EBF site 389 (partition 1)":1,
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1005 "EBF site 417 (partition 1)":1,
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1006 "EBF site 424 (partition 1)":1,
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1007 "EBF site 431 (partition 1)":1,
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1008 "EBF site 433 (partition 1)":1,
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1012 "EBF site 466 (partition 1)":1,
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1013 "EBF site 477 (partition 1)":1,
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1014 "EBF site 488 (partition 1)":1,
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1015 "EBF site 489 (partition 1)":1,
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1016 "EBF site 499 (partition 1)":1,
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parents: 0
diff changeset
1018 "EBF site 506 (partition 1)":0.8206924955409612,
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parents:
diff changeset
1019 "EBF site 509 (partition 1)":1,
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1020 "EBF site 515 (partition 1)":0.2823207957778947,
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parents:
diff changeset
1021 "EBF site 52 (partition 1)":1,
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parents:
diff changeset
1022 "EBF site 527 (partition 1)":1,
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parents:
diff changeset
1023 "EBF site 529 (partition 1)":1,
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parents:
diff changeset
1024 "EBF site 537 (partition 1)":1,
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parents:
diff changeset
1025 "EBF site 539 (partition 1)":1,
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parents:
diff changeset
1026 "EBF site 545 (partition 1)":1,
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parents:
diff changeset
1027 "EBF site 549 (partition 1)":1,
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parents:
diff changeset
1028 "EBF site 553 (partition 1)":1,
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parents: 0
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1029 "EBF site 558 (partition 1)":0.9448958945225298,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1030 "EBF site 560 (partition 1)":1,
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parents:
diff changeset
1031 "EBF site 564 (partition 1)":1,
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parents:
diff changeset
1032 "EBF site 58 (partition 1)":1,
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parents:
diff changeset
1033 "EBF site 59 (partition 1)":1,
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parents:
diff changeset
1034 "EBF site 60 (partition 1)":1,
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parents:
diff changeset
1035 "EBF site 68 (partition 1)":1,
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parents:
diff changeset
1036 "EBF site 69 (partition 1)":1,
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parents:
diff changeset
1037 "EBF site 78 (partition 1)":1,
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parents:
diff changeset
1038 "EBF site 79 (partition 1)":1,
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parents:
diff changeset
1039 "EBF site 8 (partition 1)":1,
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parents:
diff changeset
1040 "EBF site 84 (partition 1)":1,
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parents:
diff changeset
1041 "EBF site 86 (partition 1)":1,
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parents:
diff changeset
1042 "EBF site 89 (partition 1)":1,
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parents: 0
diff changeset
1043 "Global MG94xREV":0.002547563847867838,
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parents: 0
diff changeset
1044 "Nucleotide GTR":0.002596872549070691,
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parents: 0
diff changeset
1045 "original name":"MALLARD_VIETNAM_16_2003"
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1046 },
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1047 "Node11":{
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diff changeset
1048 "EBF site 100 (partition 1)":1,
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1049 "EBF site 102 (partition 1)":2.751373061276218,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1050 "EBF site 104 (partition 1)":1,
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diff changeset
1051 "EBF site 11 (partition 1)":1,
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diff changeset
1052 "EBF site 112 (partition 1)":1,
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diff changeset
1053 "EBF site 113 (partition 1)":1,
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parents:
diff changeset
1054 "EBF site 117 (partition 1)":1,
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diff changeset
1055 "EBF site 12 (partition 1)":1,
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parents:
diff changeset
1056 "EBF site 136 (partition 1)":1,
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diff changeset
1057 "EBF site 140 (partition 1)":1,
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parents:
diff changeset
1058 "EBF site 142 (partition 1)":1,
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parents: 0
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1059 "EBF site 145 (partition 1)":1,
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parents:
diff changeset
1060 "EBF site 146 (partition 1)":1,
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parents:
diff changeset
1061 "EBF site 152 (partition 1)":1,
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parents:
diff changeset
1062 "EBF site 153 (partition 1)":1,
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parents: 0
diff changeset
1063 "EBF site 154 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1064 "EBF site 155 (partition 1)":1,
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parents:
diff changeset
1065 "EBF site 156 (partition 1)":1,
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parents:
diff changeset
1066 "EBF site 157 (partition 1)":1,
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parents: 0
diff changeset
1067 "EBF site 16 (partition 1)":0.9791249761304802,
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parents: 0
diff changeset
1068 "EBF site 167 (partition 1)":6.755467986468297,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1069 "EBF site 170 (partition 1)":1,
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iuc
parents:
diff changeset
1070 "EBF site 171 (partition 1)":1,
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iuc
parents:
diff changeset
1071 "EBF site 172 (partition 1)":1,
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iuc
parents:
diff changeset
1072 "EBF site 175 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1073 "EBF site 178 (partition 1)":0.8360624550139405,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1074 "EBF site 181 (partition 1)":1,
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iuc
parents:
diff changeset
1075 "EBF site 196 (partition 1)":1,
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parents:
diff changeset
1076 "EBF site 197 (partition 1)":1,
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parents:
diff changeset
1077 "EBF site 200 (partition 1)":1,
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iuc
parents:
diff changeset
1078 "EBF site 204 (partition 1)":1,
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parents:
diff changeset
1079 "EBF site 206 (partition 1)":1,
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iuc
parents:
diff changeset
1080 "EBF site 209 (partition 1)":1,
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parents:
diff changeset
1081 "EBF site 21 (partition 1)":1,
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iuc
parents:
diff changeset
1082 "EBF site 213 (partition 1)":1,
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parents:
diff changeset
1083 "EBF site 217 (partition 1)":1,
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parents:
diff changeset
1084 "EBF site 228 (partition 1)":1,
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parents:
diff changeset
1085 "EBF site 237 (partition 1)":1,
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parents:
diff changeset
1086 "EBF site 241 (partition 1)":1,
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parents:
diff changeset
1087 "EBF site 250 (partition 1)":1,
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parents:
diff changeset
1088 "EBF site 254 (partition 1)":1,
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parents:
diff changeset
1089 "EBF site 256 (partition 1)":1,
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parents:
diff changeset
1090 "EBF site 258 (partition 1)":1,
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parents:
diff changeset
1091 "EBF site 278 (partition 1)":1,
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parents:
diff changeset
1092 "EBF site 279 (partition 1)":1,
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parents:
diff changeset
1093 "EBF site 28 (partition 1)":1,
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iuc
parents:
diff changeset
1094 "EBF site 288 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1095 "EBF site 298 (partition 1)":0.9440558182327967,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1096 "EBF site 3 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1097 "EBF site 302 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1098 "EBF site 304 (partition 1)":1,
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iuc
parents:
diff changeset
1099 "EBF site 306 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1100 "EBF site 309 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1101 "EBF site 312 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1102 "EBF site 315 (partition 1)":1,
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parents:
diff changeset
1103 "EBF site 327 (partition 1)":1,
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diff changeset
1104 "EBF site 329 (partition 1)":1,
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1105 "EBF site 332 (partition 1)":1,
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parents: 0
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1106 "EBF site 336 (partition 1)":0.1284097991633453,
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1107 "EBF site 341 (partition 1)":0.9637996906857108,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1108 "EBF site 342 (partition 1)":1,
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diff changeset
1109 "EBF site 348 (partition 1)":1,
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1110 "EBF site 351 (partition 1)":1,
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1111 "EBF site 353 (partition 1)":1,
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1112 "EBF site 354 (partition 1)":1,
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1113 "EBF site 361 (partition 1)":1,
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1114 "EBF site 362 (partition 1)":1,
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1115 "EBF site 369 (partition 1)":1,
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1116 "EBF site 379 (partition 1)":1,
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1117 "EBF site 389 (partition 1)":1,
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1118 "EBF site 417 (partition 1)":1,
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1119 "EBF site 424 (partition 1)":1,
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diff changeset
1120 "EBF site 431 (partition 1)":1,
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diff changeset
1121 "EBF site 433 (partition 1)":1,
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1122 "EBF site 441 (partition 1)":1,
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diff changeset
1123 "EBF site 445 (partition 1)":1,
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1124 "EBF site 45 (partition 1)":1,
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diff changeset
1125 "EBF site 466 (partition 1)":1,
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diff changeset
1126 "EBF site 477 (partition 1)":1,
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diff changeset
1127 "EBF site 488 (partition 1)":1,
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diff changeset
1128 "EBF site 489 (partition 1)":1,
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1129 "EBF site 499 (partition 1)":1,
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1130 "EBF site 50 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1132 "EBF site 509 (partition 1)":1,
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1133 "EBF site 515 (partition 1)":0.4489157288941226,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1134 "EBF site 52 (partition 1)":1,
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parents:
diff changeset
1135 "EBF site 527 (partition 1)":1,
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parents:
diff changeset
1136 "EBF site 529 (partition 1)":1,
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parents:
diff changeset
1137 "EBF site 537 (partition 1)":1,
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parents:
diff changeset
1138 "EBF site 539 (partition 1)":1,
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diff changeset
1139 "EBF site 545 (partition 1)":1,
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parents:
diff changeset
1140 "EBF site 549 (partition 1)":1,
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parents:
diff changeset
1141 "EBF site 553 (partition 1)":1,
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1142 "EBF site 558 (partition 1)":0.9728546440314227,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1143 "EBF site 560 (partition 1)":1,
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parents:
diff changeset
1144 "EBF site 564 (partition 1)":1,
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parents:
diff changeset
1145 "EBF site 58 (partition 1)":1,
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parents:
diff changeset
1146 "EBF site 59 (partition 1)":1,
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parents:
diff changeset
1147 "EBF site 60 (partition 1)":1,
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parents:
diff changeset
1148 "EBF site 68 (partition 1)":1,
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diff changeset
1149 "EBF site 69 (partition 1)":1,
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diff changeset
1150 "EBF site 78 (partition 1)":1,
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parents:
diff changeset
1151 "EBF site 79 (partition 1)":1,
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parents:
diff changeset
1152 "EBF site 8 (partition 1)":1,
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parents:
diff changeset
1153 "EBF site 84 (partition 1)":1,
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diff changeset
1154 "EBF site 86 (partition 1)":1,
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parents:
diff changeset
1155 "EBF site 89 (partition 1)":1,
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diff changeset
1156 "Global MG94xREV":0.00123629096030503,
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parents: 0
diff changeset
1157 "Nucleotide GTR":0.00113802520351336
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1158 },
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1159 "Node2":{
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1160 "EBF site 100 (partition 1)":1,
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1161 "EBF site 102 (partition 1)":0.2983773057734167,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1162 "EBF site 104 (partition 1)":1,
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parents:
diff changeset
1164 "EBF site 112 (partition 1)":1,
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parents:
diff changeset
1165 "EBF site 113 (partition 1)":1,
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parents:
diff changeset
1166 "EBF site 117 (partition 1)":1,
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parents:
diff changeset
1167 "EBF site 12 (partition 1)":1,
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parents:
diff changeset
1168 "EBF site 136 (partition 1)":1,
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diff changeset
1169 "EBF site 140 (partition 1)":1,
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iuc
parents:
diff changeset
1170 "EBF site 142 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1171 "EBF site 145 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1172 "EBF site 146 (partition 1)":1,
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iuc
parents:
diff changeset
1173 "EBF site 152 (partition 1)":1,
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iuc
parents:
diff changeset
1174 "EBF site 153 (partition 1)":1,
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iuc
parents:
diff changeset
1175 "EBF site 154 (partition 1)":1,
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iuc
parents:
diff changeset
1176 "EBF site 155 (partition 1)":1,
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iuc
parents:
diff changeset
1177 "EBF site 156 (partition 1)":1,
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iuc
parents:
diff changeset
1178 "EBF site 157 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1179 "EBF site 16 (partition 1)":0.8081796234647317,
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parents: 0
diff changeset
1180 "EBF site 167 (partition 1)":0.1892834680846694,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1181 "EBF site 170 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1182 "EBF site 171 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1183 "EBF site 172 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1184 "EBF site 175 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1185 "EBF site 178 (partition 1)":0.2328474564642978,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1186 "EBF site 181 (partition 1)":1,
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parents:
diff changeset
1187 "EBF site 196 (partition 1)":1,
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parents:
diff changeset
1188 "EBF site 197 (partition 1)":1,
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parents:
diff changeset
1189 "EBF site 200 (partition 1)":1,
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parents:
diff changeset
1190 "EBF site 204 (partition 1)":1,
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parents:
diff changeset
1191 "EBF site 206 (partition 1)":1,
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parents:
diff changeset
1192 "EBF site 209 (partition 1)":1,
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parents:
diff changeset
1193 "EBF site 21 (partition 1)":1,
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parents:
diff changeset
1194 "EBF site 213 (partition 1)":1,
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parents:
diff changeset
1195 "EBF site 217 (partition 1)":1,
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parents:
diff changeset
1196 "EBF site 228 (partition 1)":1,
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parents:
diff changeset
1197 "EBF site 237 (partition 1)":1,
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parents:
diff changeset
1198 "EBF site 241 (partition 1)":1,
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parents:
diff changeset
1199 "EBF site 250 (partition 1)":1,
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parents:
diff changeset
1200 "EBF site 254 (partition 1)":1,
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parents:
diff changeset
1201 "EBF site 256 (partition 1)":1,
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parents:
diff changeset
1202 "EBF site 258 (partition 1)":1,
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parents:
diff changeset
1203 "EBF site 278 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1204 "EBF site 279 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1205 "EBF site 28 (partition 1)":1,
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parents:
diff changeset
1206 "EBF site 288 (partition 1)":1,
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parents: 0
diff changeset
1207 "EBF site 298 (partition 1)":0.5700798948217274,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1208 "EBF site 3 (partition 1)":1,
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parents:
diff changeset
1209 "EBF site 302 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1210 "EBF site 304 (partition 1)":1,
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parents:
diff changeset
1211 "EBF site 306 (partition 1)":1,
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parents:
diff changeset
1212 "EBF site 309 (partition 1)":1,
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parents:
diff changeset
1213 "EBF site 312 (partition 1)":1,
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parents:
diff changeset
1214 "EBF site 315 (partition 1)":1,
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parents:
diff changeset
1215 "EBF site 327 (partition 1)":1,
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parents:
diff changeset
1216 "EBF site 329 (partition 1)":1,
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parents:
diff changeset
1217 "EBF site 332 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1218 "EBF site 336 (partition 1)":0.04146125283101508,
823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1219 "EBF site 341 (partition 1)":0.6522232640329504,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1220 "EBF site 342 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1221 "EBF site 348 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1222 "EBF site 351 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1223 "EBF site 353 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1224 "EBF site 354 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1225 "EBF site 361 (partition 1)":1,
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iuc
parents:
diff changeset
1226 "EBF site 362 (partition 1)":1,
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iuc
parents:
diff changeset
1227 "EBF site 369 (partition 1)":1,
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iuc
parents:
diff changeset
1228 "EBF site 379 (partition 1)":1,
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iuc
parents:
diff changeset
1229 "EBF site 389 (partition 1)":1,
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iuc
parents:
diff changeset
1230 "EBF site 417 (partition 1)":1,
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iuc
parents:
diff changeset
1231 "EBF site 424 (partition 1)":1,
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iuc
parents:
diff changeset
1232 "EBF site 431 (partition 1)":1,
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iuc
parents:
diff changeset
1233 "EBF site 433 (partition 1)":1,
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iuc
parents:
diff changeset
1234 "EBF site 441 (partition 1)":1,
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iuc
parents:
diff changeset
1235 "EBF site 445 (partition 1)":1,
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iuc
parents:
diff changeset
1236 "EBF site 45 (partition 1)":1,
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iuc
parents:
diff changeset
1237 "EBF site 466 (partition 1)":1,
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iuc
parents:
diff changeset
1238 "EBF site 477 (partition 1)":1,
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iuc
parents:
diff changeset
1239 "EBF site 488 (partition 1)":1,
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iuc
parents:
diff changeset
1240 "EBF site 489 (partition 1)":1,
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iuc
parents:
diff changeset
1241 "EBF site 499 (partition 1)":1,
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iuc
parents:
diff changeset
1242 "EBF site 50 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1243 "EBF site 506 (partition 1)":0.4964107471446499,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1244 "EBF site 509 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1245 "EBF site 515 (partition 1)":0.1495191727199686,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1246 "EBF site 52 (partition 1)":1,
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iuc
parents:
diff changeset
1247 "EBF site 527 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1248 "EBF site 529 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1249 "EBF site 537 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1250 "EBF site 539 (partition 1)":1,
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iuc
parents:
diff changeset
1251 "EBF site 545 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1252 "EBF site 549 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1253 "EBF site 553 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1254 "EBF site 558 (partition 1)":0.6259225541498677,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1255 "EBF site 560 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1256 "EBF site 564 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1257 "EBF site 58 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1258 "EBF site 59 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1259 "EBF site 60 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1260 "EBF site 68 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1261 "EBF site 69 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1262 "EBF site 78 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1263 "EBF site 79 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1264 "EBF site 8 (partition 1)":1,
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iuc
parents:
diff changeset
1265 "EBF site 84 (partition 1)":1,
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iuc
parents:
diff changeset
1266 "EBF site 86 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1267 "EBF site 89 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1268 "Global MG94xREV":0.01343311691788217,
823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1269 "Nucleotide GTR":0.01305159279939348
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1270 },
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1301 "EBF site 200 (partition 1)":1,
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1321 "EBF site 302 (partition 1)":1,
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1322 "EBF site 304 (partition 1)":1,
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1323 "EBF site 306 (partition 1)":1,
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1324 "EBF site 309 (partition 1)":1,
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1327 "EBF site 327 (partition 1)":1,
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1328 "EBF site 329 (partition 1)":1,
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1336 "EBF site 354 (partition 1)":1,
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1337 "EBF site 361 (partition 1)":1,
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1338 "EBF site 362 (partition 1)":1,
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1339 "EBF site 369 (partition 1)":1,
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1340 "EBF site 379 (partition 1)":1,
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1341 "EBF site 389 (partition 1)":1,
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1342 "EBF site 417 (partition 1)":1,
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1343 "EBF site 424 (partition 1)":1,
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1344 "EBF site 431 (partition 1)":1,
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1345 "EBF site 433 (partition 1)":1,
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1346 "EBF site 441 (partition 1)":1,
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1347 "EBF site 445 (partition 1)":1,
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1348 "EBF site 45 (partition 1)":1,
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1349 "EBF site 466 (partition 1)":1,
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iuc
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1350 "EBF site 477 (partition 1)":1,
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parents:
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1351 "EBF site 488 (partition 1)":1,
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parents:
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1352 "EBF site 489 (partition 1)":1,
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diff changeset
1353 "EBF site 499 (partition 1)":1,
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diff changeset
1354 "EBF site 50 (partition 1)":1,
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1356 "EBF site 509 (partition 1)":1,
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1358 "EBF site 52 (partition 1)":1,
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diff changeset
1359 "EBF site 527 (partition 1)":1,
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diff changeset
1360 "EBF site 529 (partition 1)":1,
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1361 "EBF site 537 (partition 1)":1,
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1362 "EBF site 539 (partition 1)":1,
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diff changeset
1363 "EBF site 545 (partition 1)":1,
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parents:
diff changeset
1364 "EBF site 549 (partition 1)":1,
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diff changeset
1365 "EBF site 553 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1367 "EBF site 560 (partition 1)":1,
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1368 "EBF site 564 (partition 1)":1,
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1369 "EBF site 58 (partition 1)":1,
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1370 "EBF site 59 (partition 1)":1,
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parents:
diff changeset
1371 "EBF site 60 (partition 1)":1,
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parents:
diff changeset
1372 "EBF site 68 (partition 1)":1,
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parents:
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1373 "EBF site 69 (partition 1)":1,
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diff changeset
1374 "EBF site 78 (partition 1)":1,
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parents:
diff changeset
1375 "EBF site 79 (partition 1)":1,
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1376 "EBF site 8 (partition 1)":1,
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parents:
diff changeset
1377 "EBF site 84 (partition 1)":1,
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parents:
diff changeset
1378 "EBF site 86 (partition 1)":1,
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parents:
diff changeset
1379 "EBF site 89 (partition 1)":1,
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parents: 0
diff changeset
1380 "Global MG94xREV":0.003770854449924277,
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diff changeset
1381 "Nucleotide GTR":0.003989068979008407
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1382 },
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diff changeset
1383 "Node4":{
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1384 "EBF site 100 (partition 1)":1,
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diff changeset
1386 "EBF site 104 (partition 1)":1,
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1387 "EBF site 11 (partition 1)":1,
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parents:
diff changeset
1388 "EBF site 112 (partition 1)":1,
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1389 "EBF site 113 (partition 1)":1,
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diff changeset
1390 "EBF site 117 (partition 1)":1,
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diff changeset
1391 "EBF site 12 (partition 1)":1,
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diff changeset
1392 "EBF site 136 (partition 1)":1,
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diff changeset
1393 "EBF site 140 (partition 1)":1,
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parents:
diff changeset
1394 "EBF site 142 (partition 1)":1,
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parents:
diff changeset
1396 "EBF site 146 (partition 1)":1,
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parents:
diff changeset
1397 "EBF site 152 (partition 1)":1,
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parents:
diff changeset
1398 "EBF site 153 (partition 1)":1,
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parents: 0
diff changeset
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iuc
parents:
diff changeset
1400 "EBF site 155 (partition 1)":1,
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parents:
diff changeset
1401 "EBF site 156 (partition 1)":1,
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iuc
parents:
diff changeset
1402 "EBF site 157 (partition 1)":1,
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parents: 0
diff changeset
1403 "EBF site 16 (partition 1)":0.9932935525732471,
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parents: 0
diff changeset
1404 "EBF site 167 (partition 1)":0.4553024703787611,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1405 "EBF site 170 (partition 1)":1,
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iuc
parents:
diff changeset
1406 "EBF site 171 (partition 1)":1,
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iuc
parents:
diff changeset
1407 "EBF site 172 (partition 1)":1,
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iuc
parents:
diff changeset
1408 "EBF site 175 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1409 "EBF site 178 (partition 1)":0.7349411890690492,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1410 "EBF site 181 (partition 1)":1,
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iuc
parents:
diff changeset
1411 "EBF site 196 (partition 1)":1,
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iuc
parents:
diff changeset
1412 "EBF site 197 (partition 1)":1,
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iuc
parents:
diff changeset
1413 "EBF site 200 (partition 1)":1,
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iuc
parents:
diff changeset
1414 "EBF site 204 (partition 1)":1,
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iuc
parents:
diff changeset
1415 "EBF site 206 (partition 1)":1,
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iuc
parents:
diff changeset
1416 "EBF site 209 (partition 1)":1,
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iuc
parents:
diff changeset
1417 "EBF site 21 (partition 1)":1,
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iuc
parents:
diff changeset
1418 "EBF site 213 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1419 "EBF site 217 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1420 "EBF site 228 (partition 1)":1,
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iuc
parents:
diff changeset
1421 "EBF site 237 (partition 1)":1,
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iuc
parents:
diff changeset
1422 "EBF site 241 (partition 1)":1,
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iuc
parents:
diff changeset
1423 "EBF site 250 (partition 1)":1,
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iuc
parents:
diff changeset
1424 "EBF site 254 (partition 1)":1,
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iuc
parents:
diff changeset
1425 "EBF site 256 (partition 1)":1,
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iuc
parents:
diff changeset
1426 "EBF site 258 (partition 1)":1,
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iuc
parents:
diff changeset
1427 "EBF site 278 (partition 1)":1,
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iuc
parents:
diff changeset
1428 "EBF site 279 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1429 "EBF site 28 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1430 "EBF site 288 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1431 "EBF site 298 (partition 1)":0.9527852710015089,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1432 "EBF site 3 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1433 "EBF site 302 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1434 "EBF site 304 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1435 "EBF site 306 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1436 "EBF site 309 (partition 1)":1,
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parents:
diff changeset
1437 "EBF site 312 (partition 1)":1,
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parents:
diff changeset
1438 "EBF site 315 (partition 1)":1,
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diff changeset
1439 "EBF site 327 (partition 1)":1,
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parents:
diff changeset
1440 "EBF site 329 (partition 1)":1,
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parents:
diff changeset
1441 "EBF site 332 (partition 1)":1,
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parents: 0
diff changeset
1442 "EBF site 336 (partition 1)":5.290467092534611,
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parents: 0
diff changeset
1443 "EBF site 341 (partition 1)":1.285390935922993,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1444 "EBF site 342 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1445 "EBF site 348 (partition 1)":1,
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parents:
diff changeset
1446 "EBF site 351 (partition 1)":1,
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parents:
diff changeset
1447 "EBF site 353 (partition 1)":1,
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diff changeset
1448 "EBF site 354 (partition 1)":1,
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parents:
diff changeset
1449 "EBF site 361 (partition 1)":1,
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parents:
diff changeset
1450 "EBF site 362 (partition 1)":1,
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diff changeset
1451 "EBF site 369 (partition 1)":1,
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parents:
diff changeset
1452 "EBF site 379 (partition 1)":1,
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diff changeset
1453 "EBF site 389 (partition 1)":1,
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parents:
diff changeset
1454 "EBF site 417 (partition 1)":1,
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parents:
diff changeset
1455 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1456 "EBF site 431 (partition 1)":1,
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parents:
diff changeset
1457 "EBF site 433 (partition 1)":1,
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parents:
diff changeset
1458 "EBF site 441 (partition 1)":1,
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parents:
diff changeset
1459 "EBF site 445 (partition 1)":1,
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parents:
diff changeset
1460 "EBF site 45 (partition 1)":1,
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parents:
diff changeset
1461 "EBF site 466 (partition 1)":1,
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parents:
diff changeset
1462 "EBF site 477 (partition 1)":1,
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parents:
diff changeset
1463 "EBF site 488 (partition 1)":1,
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parents:
diff changeset
1464 "EBF site 489 (partition 1)":1,
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parents:
diff changeset
1465 "EBF site 499 (partition 1)":1,
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parents:
diff changeset
1466 "EBF site 50 (partition 1)":1,
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parents: 0
diff changeset
1467 "EBF site 506 (partition 1)":0.865141523379052,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1468 "EBF site 509 (partition 1)":1,
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parents: 0
diff changeset
1469 "EBF site 515 (partition 1)":4.435657228737346,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1470 "EBF site 52 (partition 1)":1,
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iuc
parents:
diff changeset
1471 "EBF site 527 (partition 1)":1,
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parents:
diff changeset
1472 "EBF site 529 (partition 1)":1,
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parents:
diff changeset
1473 "EBF site 537 (partition 1)":1,
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parents:
diff changeset
1474 "EBF site 539 (partition 1)":1,
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iuc
parents:
diff changeset
1475 "EBF site 545 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1476 "EBF site 549 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1477 "EBF site 553 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1478 "EBF site 558 (partition 1)":0.8961900178321013,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1479 "EBF site 560 (partition 1)":1,
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iuc
parents:
diff changeset
1480 "EBF site 564 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1481 "EBF site 58 (partition 1)":1,
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iuc
parents:
diff changeset
1482 "EBF site 59 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1483 "EBF site 60 (partition 1)":1,
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iuc
parents:
diff changeset
1484 "EBF site 68 (partition 1)":1,
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iuc
parents:
diff changeset
1485 "EBF site 69 (partition 1)":1,
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iuc
parents:
diff changeset
1486 "EBF site 78 (partition 1)":1,
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iuc
parents:
diff changeset
1487 "EBF site 79 (partition 1)":1,
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iuc
parents:
diff changeset
1488 "EBF site 8 (partition 1)":1,
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iuc
parents:
diff changeset
1489 "EBF site 84 (partition 1)":1,
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iuc
parents:
diff changeset
1490 "EBF site 86 (partition 1)":1,
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iuc
parents:
diff changeset
1491 "EBF site 89 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1492 "Global MG94xREV":0.002388729972850264,
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iuc
parents: 0
diff changeset
1493 "Nucleotide GTR":0.002273329319054118
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1494 },
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1495 "Node5":{
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1496 "EBF site 100 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1497 "EBF site 102 (partition 1)":0.5075047703765134,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1498 "EBF site 104 (partition 1)":1,
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iuc
parents:
diff changeset
1499 "EBF site 11 (partition 1)":1,
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iuc
parents:
diff changeset
1500 "EBF site 112 (partition 1)":1,
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iuc
parents:
diff changeset
1501 "EBF site 113 (partition 1)":1,
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iuc
parents:
diff changeset
1502 "EBF site 117 (partition 1)":1,
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iuc
parents:
diff changeset
1503 "EBF site 12 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1504 "EBF site 136 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1505 "EBF site 140 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1506 "EBF site 142 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1507 "EBF site 145 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1508 "EBF site 146 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1509 "EBF site 152 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1510 "EBF site 153 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1511 "EBF site 154 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1512 "EBF site 155 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1513 "EBF site 156 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1514 "EBF site 157 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1515 "EBF site 16 (partition 1)":0.9911612020516568,
823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1516 "EBF site 167 (partition 1)":0.3799511856112101,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1517 "EBF site 170 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1518 "EBF site 171 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1519 "EBF site 172 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1520 "EBF site 175 (partition 1)":1,
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parents: 0
diff changeset
1521 "EBF site 178 (partition 1)":0.6670176831386634,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1522 "EBF site 181 (partition 1)":1,
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parents:
diff changeset
1523 "EBF site 196 (partition 1)":1,
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parents:
diff changeset
1524 "EBF site 197 (partition 1)":1,
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diff changeset
1525 "EBF site 200 (partition 1)":1,
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diff changeset
1526 "EBF site 204 (partition 1)":1,
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diff changeset
1527 "EBF site 206 (partition 1)":1,
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parents:
diff changeset
1528 "EBF site 209 (partition 1)":1,
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diff changeset
1529 "EBF site 21 (partition 1)":1,
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diff changeset
1530 "EBF site 213 (partition 1)":1,
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diff changeset
1531 "EBF site 217 (partition 1)":1,
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diff changeset
1532 "EBF site 228 (partition 1)":1,
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diff changeset
1533 "EBF site 237 (partition 1)":1,
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diff changeset
1534 "EBF site 241 (partition 1)":1,
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diff changeset
1535 "EBF site 250 (partition 1)":1,
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diff changeset
1536 "EBF site 254 (partition 1)":1,
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diff changeset
1537 "EBF site 256 (partition 1)":1,
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diff changeset
1538 "EBF site 258 (partition 1)":1,
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diff changeset
1539 "EBF site 278 (partition 1)":1,
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parents:
diff changeset
1540 "EBF site 279 (partition 1)":1,
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parents:
diff changeset
1541 "EBF site 28 (partition 1)":1,
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parents:
diff changeset
1542 "EBF site 288 (partition 1)":1,
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diff changeset
1543 "EBF site 298 (partition 1)":0.9374322268779626,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1544 "EBF site 3 (partition 1)":1,
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parents:
diff changeset
1545 "EBF site 302 (partition 1)":1,
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diff changeset
1546 "EBF site 304 (partition 1)":1,
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diff changeset
1547 "EBF site 306 (partition 1)":1,
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parents:
diff changeset
1548 "EBF site 309 (partition 1)":1,
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diff changeset
1549 "EBF site 312 (partition 1)":1,
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diff changeset
1550 "EBF site 315 (partition 1)":1,
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diff changeset
1551 "EBF site 327 (partition 1)":1,
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diff changeset
1552 "EBF site 329 (partition 1)":1,
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parents:
diff changeset
1553 "EBF site 332 (partition 1)":1,
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parents: 0
diff changeset
1554 "EBF site 336 (partition 1)":5.563599147826012,
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diff changeset
1555 "EBF site 341 (partition 1)":1.396068738037301,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1556 "EBF site 342 (partition 1)":1,
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parents:
diff changeset
1557 "EBF site 348 (partition 1)":1,
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diff changeset
1558 "EBF site 351 (partition 1)":1,
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diff changeset
1559 "EBF site 353 (partition 1)":1,
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diff changeset
1560 "EBF site 354 (partition 1)":1,
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diff changeset
1561 "EBF site 361 (partition 1)":1,
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parents:
diff changeset
1562 "EBF site 362 (partition 1)":1,
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diff changeset
1563 "EBF site 369 (partition 1)":1,
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diff changeset
1564 "EBF site 379 (partition 1)":1,
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diff changeset
1565 "EBF site 389 (partition 1)":1,
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diff changeset
1566 "EBF site 417 (partition 1)":1,
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parents:
diff changeset
1567 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1568 "EBF site 431 (partition 1)":1,
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parents:
diff changeset
1569 "EBF site 433 (partition 1)":1,
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parents:
diff changeset
1570 "EBF site 441 (partition 1)":1,
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diff changeset
1571 "EBF site 445 (partition 1)":1,
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iuc
parents:
diff changeset
1572 "EBF site 45 (partition 1)":1,
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iuc
parents:
diff changeset
1573 "EBF site 466 (partition 1)":1,
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iuc
parents:
diff changeset
1574 "EBF site 477 (partition 1)":1,
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iuc
parents:
diff changeset
1575 "EBF site 488 (partition 1)":1,
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iuc
parents:
diff changeset
1576 "EBF site 489 (partition 1)":1,
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iuc
parents:
diff changeset
1577 "EBF site 499 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1578 "EBF site 50 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1579 "EBF site 506 (partition 1)":0.8247013971668732,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1580 "EBF site 509 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1581 "EBF site 515 (partition 1)":4.713346547677442,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1582 "EBF site 52 (partition 1)":1,
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iuc
parents:
diff changeset
1583 "EBF site 527 (partition 1)":1,
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iuc
parents:
diff changeset
1584 "EBF site 529 (partition 1)":1,
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iuc
parents:
diff changeset
1585 "EBF site 537 (partition 1)":1,
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iuc
parents:
diff changeset
1586 "EBF site 539 (partition 1)":1,
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iuc
parents:
diff changeset
1587 "EBF site 545 (partition 1)":1,
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iuc
parents:
diff changeset
1588 "EBF site 549 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1589 "EBF site 553 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1590 "EBF site 558 (partition 1)":0.8638872528714684,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1591 "EBF site 560 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1592 "EBF site 564 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1593 "EBF site 58 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1594 "EBF site 59 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1595 "EBF site 60 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1596 "EBF site 68 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1597 "EBF site 69 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1598 "EBF site 78 (partition 1)":1,
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iuc
parents:
diff changeset
1599 "EBF site 79 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1600 "EBF site 8 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1601 "EBF site 84 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1602 "EBF site 86 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1603 "EBF site 89 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1604 "Global MG94xREV":0.003196119577897838,
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diff changeset
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diff changeset
1606 },
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1607 "Node7":{
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1624 "EBF site 155 (partition 1)":1,
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1629 "EBF site 170 (partition 1)":1,
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1630 "EBF site 171 (partition 1)":1,
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1631 "EBF site 172 (partition 1)":1,
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1659 "EBF site 306 (partition 1)":1,
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1664 "EBF site 329 (partition 1)":1,
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parents:
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1674 "EBF site 362 (partition 1)":1,
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parents:
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1675 "EBF site 369 (partition 1)":1,
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parents:
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parents:
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1677 "EBF site 389 (partition 1)":1,
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iuc
parents:
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1678 "EBF site 417 (partition 1)":1,
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iuc
parents:
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1679 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1680 "EBF site 431 (partition 1)":1,
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iuc
parents:
diff changeset
1681 "EBF site 433 (partition 1)":1,
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iuc
parents:
diff changeset
1682 "EBF site 441 (partition 1)":1,
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iuc
parents:
diff changeset
1683 "EBF site 445 (partition 1)":1,
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iuc
parents:
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1684 "EBF site 45 (partition 1)":1,
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parents:
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1685 "EBF site 466 (partition 1)":1,
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iuc
parents:
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1686 "EBF site 477 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
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1687 "EBF site 488 (partition 1)":1,
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diff changeset
1688 "EBF site 489 (partition 1)":1,
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1698 "EBF site 539 (partition 1)":1,
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1699 "EBF site 545 (partition 1)":1,
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1700 "EBF site 549 (partition 1)":1,
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1701 "EBF site 553 (partition 1)":1,
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1703 "EBF site 560 (partition 1)":1,
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1704 "EBF site 564 (partition 1)":1,
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1715 "EBF site 89 (partition 1)":1,
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1718 },
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1719 "Node9":{
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1728 "EBF site 136 (partition 1)":1,
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1743 "EBF site 172 (partition 1)":1,
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1746 "EBF site 181 (partition 1)":1,
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1748 "EBF site 197 (partition 1)":1,
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1749 "EBF site 200 (partition 1)":1,
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1750 "EBF site 204 (partition 1)":1,
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1751 "EBF site 206 (partition 1)":1,
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1752 "EBF site 209 (partition 1)":1,
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1754 "EBF site 213 (partition 1)":1,
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1755 "EBF site 217 (partition 1)":1,
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1761 "EBF site 256 (partition 1)":1,
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1762 "EBF site 258 (partition 1)":1,
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1767 "EBF site 298 (partition 1)":0.820567442879936,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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1768 "EBF site 3 (partition 1)":1,
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1769 "EBF site 302 (partition 1)":1,
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1770 "EBF site 304 (partition 1)":1,
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1771 "EBF site 306 (partition 1)":1,
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parents:
diff changeset
1772 "EBF site 309 (partition 1)":1,
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diff changeset
1773 "EBF site 312 (partition 1)":1,
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diff changeset
1774 "EBF site 315 (partition 1)":1,
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diff changeset
1775 "EBF site 327 (partition 1)":1,
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parents:
diff changeset
1776 "EBF site 329 (partition 1)":1,
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1777 "EBF site 332 (partition 1)":1,
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parents: 0
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1778 "EBF site 336 (partition 1)":0.05337910105382759,
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1779 "EBF site 341 (partition 1)":0.8081994197048832,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1780 "EBF site 342 (partition 1)":1,
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diff changeset
1781 "EBF site 348 (partition 1)":1,
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diff changeset
1782 "EBF site 351 (partition 1)":1,
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diff changeset
1783 "EBF site 353 (partition 1)":1,
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1784 "EBF site 354 (partition 1)":1,
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1785 "EBF site 361 (partition 1)":1,
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diff changeset
1786 "EBF site 362 (partition 1)":1,
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1787 "EBF site 369 (partition 1)":1,
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1788 "EBF site 379 (partition 1)":1,
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diff changeset
1789 "EBF site 389 (partition 1)":1,
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diff changeset
1790 "EBF site 417 (partition 1)":1,
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diff changeset
1791 "EBF site 424 (partition 1)":1,
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diff changeset
1792 "EBF site 431 (partition 1)":1,
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diff changeset
1793 "EBF site 433 (partition 1)":1,
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parents:
diff changeset
1794 "EBF site 441 (partition 1)":1,
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parents:
diff changeset
1795 "EBF site 445 (partition 1)":1,
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parents:
diff changeset
1796 "EBF site 45 (partition 1)":1,
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parents:
diff changeset
1797 "EBF site 466 (partition 1)":1,
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parents:
diff changeset
1798 "EBF site 477 (partition 1)":1,
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parents:
diff changeset
1799 "EBF site 488 (partition 1)":1,
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parents:
diff changeset
1800 "EBF site 489 (partition 1)":1,
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diff changeset
1801 "EBF site 499 (partition 1)":1,
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parents:
diff changeset
1802 "EBF site 50 (partition 1)":1,
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parents: 0
diff changeset
1803 "EBF site 506 (partition 1)":3.467552400984787,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1804 "EBF site 509 (partition 1)":1,
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parents: 0
diff changeset
1805 "EBF site 515 (partition 1)":0.2256255056809444,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1806 "EBF site 52 (partition 1)":1,
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parents:
diff changeset
1807 "EBF site 527 (partition 1)":1,
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parents:
diff changeset
1808 "EBF site 529 (partition 1)":1,
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parents:
diff changeset
1809 "EBF site 537 (partition 1)":1,
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parents:
diff changeset
1810 "EBF site 539 (partition 1)":1,
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iuc
parents:
diff changeset
1811 "EBF site 545 (partition 1)":1,
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iuc
parents:
diff changeset
1812 "EBF site 549 (partition 1)":1,
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iuc
parents:
diff changeset
1813 "EBF site 553 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1814 "EBF site 558 (partition 1)":0.8118282720843134,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1815 "EBF site 560 (partition 1)":1,
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iuc
parents:
diff changeset
1816 "EBF site 564 (partition 1)":1,
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iuc
parents:
diff changeset
1817 "EBF site 58 (partition 1)":1,
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iuc
parents:
diff changeset
1818 "EBF site 59 (partition 1)":1,
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parents:
diff changeset
1819 "EBF site 60 (partition 1)":1,
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iuc
parents:
diff changeset
1820 "EBF site 68 (partition 1)":1,
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iuc
parents:
diff changeset
1821 "EBF site 69 (partition 1)":1,
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iuc
parents:
diff changeset
1822 "EBF site 78 (partition 1)":1,
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iuc
parents:
diff changeset
1823 "EBF site 79 (partition 1)":1,
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iuc
parents:
diff changeset
1824 "EBF site 8 (partition 1)":1,
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iuc
parents:
diff changeset
1825 "EBF site 84 (partition 1)":1,
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iuc
parents:
diff changeset
1826 "EBF site 86 (partition 1)":1,
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iuc
parents:
diff changeset
1827 "EBF site 89 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1828 "Global MG94xREV":0.004576755835518515,
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iuc
parents: 0
diff changeset
1829 "Nucleotide GTR":0.004637868093937116
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1830 },
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1831 "SWINE_ANHUI_1_2004":{
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1832 "EBF site 100 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1833 "EBF site 102 (partition 1)":0.1686787772874804,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1834 "EBF site 104 (partition 1)":1,
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iuc
parents:
diff changeset
1835 "EBF site 11 (partition 1)":1,
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iuc
parents:
diff changeset
1836 "EBF site 112 (partition 1)":1,
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iuc
parents:
diff changeset
1837 "EBF site 113 (partition 1)":1,
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iuc
parents:
diff changeset
1838 "EBF site 117 (partition 1)":1,
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iuc
parents:
diff changeset
1839 "EBF site 12 (partition 1)":1,
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iuc
parents:
diff changeset
1840 "EBF site 136 (partition 1)":1,
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iuc
parents:
diff changeset
1841 "EBF site 140 (partition 1)":1,
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iuc
parents:
diff changeset
1842 "EBF site 142 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1843 "EBF site 145 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1844 "EBF site 146 (partition 1)":1,
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iuc
parents:
diff changeset
1845 "EBF site 152 (partition 1)":1,
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iuc
parents:
diff changeset
1846 "EBF site 153 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1847 "EBF site 154 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1848 "EBF site 155 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1849 "EBF site 156 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1850 "EBF site 157 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1851 "EBF site 16 (partition 1)":2.825233043426132,
823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1852 "EBF site 167 (partition 1)":0.1907402925694587,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1853 "EBF site 170 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1854 "EBF site 171 (partition 1)":1,
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1855 "EBF site 172 (partition 1)":1,
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diff changeset
1856 "EBF site 175 (partition 1)":1,
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diff changeset
1858 "EBF site 181 (partition 1)":1,
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diff changeset
1859 "EBF site 196 (partition 1)":1,
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1860 "EBF site 197 (partition 1)":1,
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1861 "EBF site 200 (partition 1)":1,
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1862 "EBF site 204 (partition 1)":1,
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1863 "EBF site 206 (partition 1)":1,
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1864 "EBF site 209 (partition 1)":1,
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1865 "EBF site 21 (partition 1)":1,
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1866 "EBF site 213 (partition 1)":1,
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1867 "EBF site 217 (partition 1)":1,
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1868 "EBF site 228 (partition 1)":1,
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1869 "EBF site 237 (partition 1)":1,
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1870 "EBF site 241 (partition 1)":1,
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1871 "EBF site 250 (partition 1)":1,
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1873 "EBF site 256 (partition 1)":1,
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1874 "EBF site 258 (partition 1)":1,
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1875 "EBF site 278 (partition 1)":1,
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diff changeset
1876 "EBF site 279 (partition 1)":1,
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diff changeset
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1878 "EBF site 288 (partition 1)":1,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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1880 "EBF site 3 (partition 1)":1,
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diff changeset
1881 "EBF site 302 (partition 1)":1,
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diff changeset
1882 "EBF site 304 (partition 1)":1,
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diff changeset
1883 "EBF site 306 (partition 1)":1,
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1892 "EBF site 342 (partition 1)":1,
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diff changeset
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diff changeset
1894 "EBF site 351 (partition 1)":1,
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
1900 "EBF site 379 (partition 1)":1,
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diff changeset
1901 "EBF site 389 (partition 1)":1,
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1902 "EBF site 417 (partition 1)":1,
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diff changeset
1903 "EBF site 424 (partition 1)":1,
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1904 "EBF site 431 (partition 1)":1,
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diff changeset
1905 "EBF site 433 (partition 1)":1,
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diff changeset
1906 "EBF site 441 (partition 1)":1,
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1907 "EBF site 445 (partition 1)":1,
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1908 "EBF site 45 (partition 1)":1,
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diff changeset
1909 "EBF site 466 (partition 1)":1,
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diff changeset
1910 "EBF site 477 (partition 1)":1,
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diff changeset
1911 "EBF site 488 (partition 1)":1,
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1912 "EBF site 489 (partition 1)":1,
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diff changeset
1913 "EBF site 499 (partition 1)":1,
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parents:
diff changeset
1914 "EBF site 50 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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1915 "EBF site 506 (partition 1)":0.5589771102055697,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
1916 "EBF site 509 (partition 1)":1,
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823a5afee916 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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1917 "EBF site 515 (partition 1)":0.1243159242286358,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1918 "EBF site 52 (partition 1)":1,
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diff changeset
1919 "EBF site 527 (partition 1)":1,
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parents:
diff changeset
1920 "EBF site 529 (partition 1)":1,
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parents:
diff changeset
1921 "EBF site 537 (partition 1)":1,
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parents:
diff changeset
1922 "EBF site 539 (partition 1)":1,
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parents:
diff changeset
1923 "EBF site 545 (partition 1)":1,
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parents:
diff changeset
1924 "EBF site 549 (partition 1)":1,
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parents:
diff changeset
1925 "EBF site 553 (partition 1)":1,
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parents: 0
diff changeset
1926 "EBF site 558 (partition 1)":0.6961922557341373,
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bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1927 "EBF site 560 (partition 1)":1,
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parents:
diff changeset
1928 "EBF site 564 (partition 1)":1,
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parents:
diff changeset
1929 "EBF site 58 (partition 1)":1,
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parents:
diff changeset
1930 "EBF site 59 (partition 1)":1,
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parents:
diff changeset
1931 "EBF site 60 (partition 1)":1,
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parents:
diff changeset
1932 "EBF site 68 (partition 1)":1,
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parents:
diff changeset
1933 "EBF site 69 (partition 1)":1,
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parents:
diff changeset
1934 "EBF site 78 (partition 1)":1,
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parents:
diff changeset
1935 "EBF site 79 (partition 1)":1,
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parents:
diff changeset
1936 "EBF site 8 (partition 1)":1,
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parents:
diff changeset
1937 "EBF site 84 (partition 1)":1,
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iuc
parents:
diff changeset
1938 "EBF site 86 (partition 1)":1,
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1939 "EBF site 89 (partition 1)":1,
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1940 "Global MG94xREV":0.007944352318354534,
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parents: 0
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1941 "Nucleotide GTR":0.00775874788653539,
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1942 "original name":"SWINE_ANHUI_1_2004"
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parents:
diff changeset
1943 }
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1944 },
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1945 "attributes":{
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1946 "EBF site 100 (partition 1)":{
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1947 "attribute type":"branch label",
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1948 "display order":102
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1949 },
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1950 "EBF site 102 (partition 1)":{
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1951 "attribute type":"branch label",
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1952 "display order":104
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1953 },
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1954 "EBF site 104 (partition 1)":{
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1955 "attribute type":"branch label",
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1956 "display order":106
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1957 },
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1958 "EBF site 11 (partition 1)":{
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1959 "attribute type":"branch label",
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parents:
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1960 "display order":13
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parents:
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1961 },
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1962 "EBF site 112 (partition 1)":{
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1963 "attribute type":"branch label",
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parents:
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1964 "display order":114
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1965 },
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1966 "EBF site 113 (partition 1)":{
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1967 "attribute type":"branch label",
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parents:
diff changeset
1968 "display order":115
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1969 },
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1970 "EBF site 117 (partition 1)":{
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1971 "attribute type":"branch label",
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1972 "display order":119
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1973 },
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1974 "EBF site 12 (partition 1)":{
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1975 "attribute type":"branch label",
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parents:
diff changeset
1976 "display order":14
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parents:
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1977 },
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1978 "EBF site 136 (partition 1)":{
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1979 "attribute type":"branch label",
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iuc
parents:
diff changeset
1980 "display order":138
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parents:
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1981 },
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parents:
diff changeset
1982 "EBF site 140 (partition 1)":{
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1983 "attribute type":"branch label",
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parents:
diff changeset
1984 "display order":142
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parents:
diff changeset
1985 },
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parents:
diff changeset
1986 "EBF site 142 (partition 1)":{
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1987 "attribute type":"branch label",
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parents:
diff changeset
1988 "display order":144
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iuc
parents:
diff changeset
1989 },
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parents:
diff changeset
1990 "EBF site 145 (partition 1)":{
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1991 "attribute type":"branch label",
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iuc
parents:
diff changeset
1992 "display order":147
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parents:
diff changeset
1993 },
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parents:
diff changeset
1994 "EBF site 146 (partition 1)":{
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parents:
diff changeset
1995 "attribute type":"branch label",
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iuc
parents:
diff changeset
1996 "display order":148
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iuc
parents:
diff changeset
1997 },
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iuc
parents:
diff changeset
1998 "EBF site 152 (partition 1)":{
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parents:
diff changeset
1999 "attribute type":"branch label",
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iuc
parents:
diff changeset
2000 "display order":154
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iuc
parents:
diff changeset
2001 },
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iuc
parents:
diff changeset
2002 "EBF site 153 (partition 1)":{
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parents:
diff changeset
2003 "attribute type":"branch label",
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iuc
parents:
diff changeset
2004 "display order":155
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iuc
parents:
diff changeset
2005 },
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iuc
parents:
diff changeset
2006 "EBF site 154 (partition 1)":{
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iuc
parents:
diff changeset
2007 "attribute type":"branch label",
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iuc
parents:
diff changeset
2008 "display order":156
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iuc
parents:
diff changeset
2009 },
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iuc
parents:
diff changeset
2010 "EBF site 155 (partition 1)":{
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parents:
diff changeset
2011 "attribute type":"branch label",
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iuc
parents:
diff changeset
2012 "display order":157
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iuc
parents:
diff changeset
2013 },
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2014 "EBF site 156 (partition 1)":{
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iuc
parents:
diff changeset
2015 "attribute type":"branch label",
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iuc
parents:
diff changeset
2016 "display order":158
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iuc
parents:
diff changeset
2017 },
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2018 "EBF site 157 (partition 1)":{
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iuc
parents:
diff changeset
2019 "attribute type":"branch label",
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iuc
parents:
diff changeset
2020 "display order":159
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iuc
parents:
diff changeset
2021 },
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2022 "EBF site 16 (partition 1)":{
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parents:
diff changeset
2023 "attribute type":"branch label",
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parents:
diff changeset
2024 "display order":18
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iuc
parents:
diff changeset
2025 },
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2026 "EBF site 167 (partition 1)":{
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iuc
parents:
diff changeset
2027 "attribute type":"branch label",
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iuc
parents:
diff changeset
2028 "display order":169
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iuc
parents:
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2029 },
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2467 "Rate Distributions":{
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2468 "non-synonymous/synonymous rate ratio for *test*": [
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2469 [0.2932353608697501, 1]
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2470 ]
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2471 },
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2472 "display order":1,
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2473 "estimated parameters":27
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2474 },
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2475 "Nucleotide GTR":{
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2476 "AIC-c":6152.529196194525,
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2477 "Equilibrium frequencies": [
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2478 [0.3478363400542389],
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2479 [0.184883858035609],
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2480 [0.2307510906732697],
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2481 [0.2365287112368824]
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2482 ],
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2483 "Log Likelihood":-3056.215005465311,
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2484 "Rate Distributions":{
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2485 "Substitution rate from nucleotide A to nucleotide C":0.1810796022573985,
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2486 "Substitution rate from nucleotide A to nucleotide G":1,
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2487 "Substitution rate from nucleotide A to nucleotide T":0.08708610799393901,
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2488 "Substitution rate from nucleotide C to nucleotide G":0.02931879134098465,
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2489 "Substitution rate from nucleotide C to nucleotide T":1.419136867291551,
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2490 "Substitution rate from nucleotide G to nucleotide T":0.1065442350926398
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2491 },
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2492 "display order":0,
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2493 "estimated parameters":20
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2494 }
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2495 },
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2496 "input":{
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2497 "file name":"/tmp/tmpdqyv1aux/job_working_directory/000/3/working/./meme_input.fa",
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2498 "number of sequences":5,
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diff changeset
2499 "number of sites":566,
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diff changeset
2500 "partition count":1,
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2501 "trees":{
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2502 "0":"(((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516)Node7:0.002095219592954275)Node5:0.003887237703073042)Node4:-1)Node3:0.003130608143291779,(CK_HK_WF157_2003:0.00663129750258774)Node9:0.004655295319725731)Node2:0.0116808817874948,(MALLARD_VIETNAM_16_2003:0.003244216605281072)Node11:0.0004125980823087554,CHICKEN_CK_160_2005:0.006168335080088849)"
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2503 }
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2504 },
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2505 "tested":{
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2506 "0":{
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2507 "CHICKEN_CK_160_2005":"test",
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iuc
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diff changeset
2508 "CHICKEN_HEBEI_326_2005":"test",
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iuc
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diff changeset
2509 "CK_HK_WF157_2003":"test",
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iuc
parents:
diff changeset
2510 "MALLARD_VIETNAM_16_2003":"test",
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iuc
parents:
diff changeset
2511 "Node11":"test",
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iuc
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diff changeset
2512 "Node2":"test",
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iuc
parents:
diff changeset
2513 "Node3":"test",
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iuc
parents:
diff changeset
2514 "Node4":"test",
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iuc
parents:
diff changeset
2515 "Node5":"test",
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iuc
parents:
diff changeset
2516 "Node7":"test",
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iuc
parents:
diff changeset
2517 "Node9":"test",
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iuc
parents:
diff changeset
2518 "SWINE_ANHUI_1_2004":"test"
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iuc
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diff changeset
2519 }
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iuc
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diff changeset
2520 },
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iuc
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diff changeset
2521 "timers":{
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iuc
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diff changeset
2522 "MEME analysis":{
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iuc
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diff changeset
2523 "order":2,
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2524 "timer":437
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iuc
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2525 },
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iuc
parents:
diff changeset
2526 "Model fitting":{
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2527 "order":1,
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2528 "timer":4
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diff changeset
2529 },
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iuc
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diff changeset
2530 "Total time":{
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2531 "order":0,
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2532 "timer":442
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diff changeset
2533 }
bf97cacc1a55 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
2534 }
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iuc
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diff changeset
2535 }