Mercurial > repos > iuc > hyphy_bgm

annotate test-data/cfel-out1.json @ 25:d88bbb287923 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
author iuc
date Tue, 27 Apr 2021 18:01:09 +0000
parents ede53272264e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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diff changeset
62 [0, 1.024502805099405, 1.848154568858438, 2, 3, 0.6244461476808474, 1, -1, 1.806995544522219],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
63 [0.6501694979385784, 1.801412202378026, 0.9280040529467484, 4, 1, 0.5557080308475613, 0.9621981645230923, -1, 2.10951880874102],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
64 [6.08262251036685, 0.7339717298233965, 0, 3, 0, 0.2960882701960703, 0.6752256893495751, -1, 3.251841253054038],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
65 [0, 3.940293028323709, 0.724645841425226, 4, 1, 0.1646793518058165, 0.6843341952819485, -1, 3.210770285929394],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
66 [2.525715439229841, 0.5203264215330189, 3.236147645873292, 2, 3, 0.2267814230616741, 0.7572879662952333, -1, 3.398238337847957],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
67 [0, 1.66574317189596, 1.033362246206075, 2, 1, 0.6981825098370149, 1, -1, 1.783184125336636],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
69 [50.6441338117998, 0, 0, 1, 1, 0.8891278717234055, 1, -1, 22.75359426345821],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
70 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
71 [0.6581107090142762, 1.158962423870136, 0.5347971943090111, 2, 1, 0.5987666036867652, 1, -1, 1.428472016246372],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
72 [0.4323905724496316, 0, 0, 1, 0, 0.9135475338651236, 1, -1, 0.1942661253803702],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
73 [0.9968692986409634, 0.5434799477420689, 0, 1, 1, 0.2893889348524278, 0.6680954421901727, -1, 0.8321908421491773],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
74 [1.197652572567508, 0, 0, 1, 1, 0.9420876112178296, 1, -1, 0.5380860260352346],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
75 [1.663917089686765, 0, 0, 0, 1, 0.9375578679018587, 1, -1, 0.7475711695940914],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
76 [0, 2.086288961946702, 1.121121626201897, 3, 1, 0.4891714732172416, 0.8795679374194634, -1, 2.13197062214742],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
77 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
79 [0.9079601930118207, 4.166556568628996, 0.9432143945954307, 4, 1, 0.2876629695256741, 0.6724121912662631, -1, 3.906724856611323],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
80 [0, 1.206792672650923, 3.542924429196426, 1, 2, 0.3568455609094989, 0.725327390109525, -1, 2.928589896603286],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
81 [9.880640874055928, 3.371530210075762, 0.833316948781417, 4, 1, 0.270706474175933, 0.7030848704291592, -1, 7.311444091098465],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
82 [3.263620668506168, 0.4652912433238916, 0, 2, 1, 0.2588435421307538, 0.7683133710865231, -1, 1.795315808761324],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
83 [5.872193259274316, 4.385832018419878, 3.583671501629437, 3, 2, 0.8487870347559123, 1, -1, 7.838747841403747],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
84 [0.7001678859566036, 0.4202476715994486, 0.570701535221909, 1, 2, 0.8336056454349037, 1, -1, 0.946027353297898],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
85 [0, 0.5636907281917216, 3.143572329896205, 1, 3, 0.2122243163662549, 0.7349249474164755, -1, 2.239914576523292],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
86 [3.287074504995304, 0, 0, 1, 1, 0.9721552383282605, 1, -1, 1.4768296734694],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
87 [0, 0.5461879996480163, 0.7487151474213473, 1, 1, 0.828235435742404, 1, -1, 0.8247792738873165],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
88 [0.6407722392250278, 0, 0, 1, 0, 0.9881835778586947, 1, -1, 0.2878886546030102],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
89 [3.194983115284816, 29.83918845116686, 0, 6, 1, 0.3430025032595975, 0.7126829789949415, -1, 22.53577896504836],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
90 [3.61657626736909, 1.184320280774051, 0.8602278960639211, 4, 2, 0.8063714537153168, 1, -1, 2.96621148037958],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
91 [50.54141290859034, 0, 0, 2, 2, 0.8890960183490699, 1, -1, 22.70744341481916],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
92 [1.00149872844676, 0.9794774421917719, 0.79104065073158, 2, 1, 0.8681122849194385, 1, -1, 1.605922168232218],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
93 [2.478325056346672, 2.507275623206525, 0, 4, 0, 0.0265773760440865, 0.7099956171777393, -1, 2.886453065039759],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
94 [0, 0.4972591225445931, 2.114724306886552, 1, 2, 0.2772893993014431, 0.6913749022582649, -1, 1.59030324811191],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
95 [0.5707663703812399, 0, 0, 0, 1, 0.9695096575444596, 1, -1, 0.2564361443941914],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
96 [1.024551478254236, 3.585189394552973, 0.7776285115204995, 3, 1, 0.2696778421262233, 0.7204250925371963, -1, 3.451012643437537],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
97 [1.499064132890425, 2.268581133655351, 0.6266542863356086, 3, 2, 0.4046637590812993, 0.7643648782646763, -1, 2.644752884217713],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
98 [0.4690497701255414, 3.083037212823268, 0.956050652526806, 4, 1, 0.36647815640301, 0.7213833183932933, -1, 2.950854055018716],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
99 [1.165324357362414, 0, 0, 0, 2, 0.9144788393371129, 1, -1, 0.5235614792284518],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
100 [8.299440046276086, 2.756478387670579, 0, 3, 1, 0.03715262358344229, 0.6947540610103708, -1, 5.678006258846612],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
101 [0.9927395068825862, 1.151542077068671, 0, 2, 1, 0.134782155622593, 0.6147381244249973, -1, 1.260317202106484],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
102 [0, 1.221968554986739, 2.741741796411054, 1, 3, 0.5030017833391077, 0.8873710706076712, -1, 2.470038289748266],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
103 [1.113265347771757, 0, 0.7627887651246475, 0, 1, 0.1951919901647999, 0.7300180432163518, -1, 0.9469664615364187],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
104 [1.585018231189712, 1.729862175734776, 0, 2, 1, 0.07389440689698046, 0.5314713111436672, -1, 1.935368689004229],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
105 [0.6102670020768497, 0.8382807340868993, 0, 2, 0, 0.2686253663963265, 0.728013674146566, -1, 0.8669605069319147],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
106 [0, 2.751205064157212, 0.802243823374224, 2, 1, 0.3012988724380857, 0.6707486803085956, -1, 2.415377044802676],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
107 [0, 0.5902467163663473, 0, 1, 0, 0.2629575492060569, 0.7565086415620405, -1, 0.4173839128895599],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
108 [0.5383635717809734, 1.515998121346645, 0.9216339594290136, 3, 1, 0.6874711816851482, 1, -1, 1.853728810553392],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
109 [0, 0.481190845468739, 0, 1, 0, 0.2723166139452829, 0.688151443348215, -1, 0.3402667263695917],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
110 [0, 3.27251821956541, 0, 5, 0, 0.01745171804218459, 0.8158678184721297, -1, 2.314111068492279],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
111 [0, 0.5872817594876903, 0, 1, 0, 0.2584159603667636, 0.7794158804610452, -1, 0.4152872891062357],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
112 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
113 [2.21890505975442, 1.990033146773849, 1.017469889400157, 2, 2, 0.6034077258234842, 1, -1, 3.000110385076132],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
114 [2.862214454024933, 0, 0, 1, 2, 0.9844145511533737, 1, -1, 1.285946890194713],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
115 [3.703117340141719, 0.5855187342485519, 8.642796633269793, 2, 3, 0.1321361962019112, 0.6177367172439349, -1, 7.140204804630963],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
116 [0.7127923657618954, 0, 0, 1, 0, 0.9921461533492605, 1, -1, 0.3202461383762046],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
117 [0, 4.089582006883536, 0.6880686586772411, 3, 1, 0.113866177601587, 0.6083707203284792, -1, 3.294913056800077],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
118 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
119 [7.244120186652152, 1.047966384047065, 2.883576678015062, 3, 2, 0.3186870666430698, 0.692959086770396, -1, 5.684739997199993],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
120 [3.704708318772796, 0, 0, 1, 1, 0.9462192453626561, 1, -1, 1.664465824671172],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
121 [0, 2.633693580131012, 1.104037666395978, 4, 1, 0.4730128885566699, 0.8587709724281289, -1, 2.509052680349937],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
122 [0, 0.4566347499089936, 0, 1, 0, 0.283128239385232, 0.6787818046799793, -1, 0.3229022600103157],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
123 [0.6017003015092119, 2.844750183234372, 0, 5, 0, 0.190939572397941, 0.7438687508003118, -1, 2.281955724065546],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
124 [1.179110303734344, 0, 0, 2, 0, 0.9167006798670312, 1, -1, 0.5297552830646544],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
125 [0, 0, 0.8526269308663604, 0, 1, 0.1938730275183067, 0.7398827784882318, -1, 0.4994158722677771],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
126 [0, 1.668376496735974, 0, 2, 0, 0.04896391246424825, 0.5386030371067307, -1, 1.179766851847139],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
127 [5.639040616352426, 0, 0, 2, 0, 0.9442717948909276, 1, -1, 2.533530195154592],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
128 [1.124668095765815, 1.685314664922671, 0, 3, 1, 0.06136004672587703, 0.5737164368869502, -1, 1.697039692908539],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
129 [1.33722202616223, 0, 0, 1, 1, 0.9151203403135182, 1, -1, 0.6007923353279988],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
130 [0.1752837462876311, 1.561142638815214, 4.726023459307847, 2, 4, 0.3308998048107157, 0.7112444080414234, -1, 3.950901098596386],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
131 [0, 3.437648989095744, 1.609232734837918, 3, 1, 0.4909608513815463, 0.874377897222373, -1, 3.373469294895204],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
132 [0.6066891660467739, 0, 0, 1, 0, 0.9808675353365294, 1, -1, 0.2725756783512759],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
133 [2.513055010253392, 0, 0.6184461744626488, 1, 2, 0.1874867655060044, 0.7459579819068686, -1, 1.491322509018713],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
134 [3.299764371642652, 0.4276057502881009, 0, 2, 1, 0.2702664276676093, 0.7118284785048302, -1, 1.78490587447041],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
135 [0.7573891999831988, 1.586265653088565, 1.111650146087085, 2, 2, 0.7402228990967379, 1, -1, 2.113121781906836],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
136 [4.772227412448185, 0, 0.6090761550844718, 2, 1, 0.2218869031377975, 0.7544154706685113, -1, 2.50084393550245],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
137 [1.354998207479255, 0, 0, 1, 1, 0.908459548182884, 1, -1, 0.6087788875068623],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
138 [0.8560617018755099, 0.5646857472602592, 0.9068137081900917, 1, 2, 0.7214789865155466, 1, -1, 1.315078730109341],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
139 [0.4122717908825356, 0, 0, 1, 0, 0.9236152031349771, 1, -1, 0.1852270806105654],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
140 [11.47744615650339, 0.7564062060772175, 0, 3, 1, 0.263665502185258, 0.7470522561915642, -1, 5.69151288968381],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
141 [0, 1.693111538916773, 2.67628254093792, 2, 2, 0.7133946706521437, 1, -1, 2.764857860838913],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
142 [2.246554096219588, 0, 2.241321919896286, 1, 2, 0.03506606858438077, 0.7285949805865782, -1, 2.322167700502196],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
143 [0.7426948365680234, 1.840273857541018, 1.692997137522376, 4, 2, 0.9034959106229583, 1, -1, 2.62665478857086],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
144 [5.595162859090872, 20.193888455772, 0, 6, 1, 0.1472309374197671, 0.6402833790115454, -1, 16.79361513366499],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
145 [0, 9.517234629463333, 0, 5, 0, 0.00560860295821386, 1, -1, 6.729966502800369],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
146 [0.539174303084849, 4.85591423642532, 0, 5, 1, 0.3626752248047733, 0.7214922025371555, -1, 3.676027614332432],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
147 [2.809473170865717, 3.087098474436862, 0, 5, 1, 0.07376144803206519, 0.5517356312798476, -1, 3.445245419980039],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
148 [10000, 2.159595663570101, 3.493364330286813, 5, 1, 0.681422508159091, 1, -1, 4496.412382371934],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
149 [0.710026004894022, 2.259208445252253, 2.04300171486337, 2, 3, 0.9470650044570827, 1, -1, 3.113231308251038],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
150 [0.7706469649104783, 1.698850645625194, 1.16214197731024, 5, 1, 0.7519658749056793, 1, -1, 2.228266010155036],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
151 [0, 4.02874261614134, 0, 3, 0, 0.01024620807300813, 0.638680303217507, -1, 2.848863552349389],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
152 [1.02670575815307, 0, 0.7548492261890443, 1, 1, 0.1864328793306292, 0.7578901833658188, -1, 0.9034261424655761],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
153 [0, 2.360261809812653, 1.46763700746599, 3, 1, 0.6555637019432755, 1, -1, 2.528673496835839],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
154 [0, 0.5259388881533686, 0.6170391035843059, 1, 1, 0.9161258269718379, 1, -1, 0.7333327813697857],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
155 [2.830094370141204, 2.67989095418528, 1.876671064534477, 3, 1, 0.817379401221046, 1, -1, 4.265796930069911],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
156 [0, 1.479272978915023, 1.059892351242584, 1, 1, 0.790615770981274, 1, -1, 1.666864275155615],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
157 [0, 1.168896158876738, 0.7984263070357831, 2, 1, 0.7667624989137153, 1, -1, 1.29423550639484],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
158 [0, 2.162072501679363, 0, 2, 0, 0.04856079107131761, 0.5675542456460245, -1, 1.52887640994813],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
159 [0, 6.14000013653241, 0, 4, 0, 0.2973602962072562, 0.6699563300091195, -1, 4.341806927626715],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
160 [0, 1.06404578059133, 0, 2, 0, 0.1093244029899896, 0.6012842164449427, -1, 0.7524236545200654],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
161 [0, 1.345939883401718, 1.30846241488963, 2, 2, 0.9744848854073144, 1, -1, 1.718176718262745],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
162 [0.7619926064274329, 0, 3.554766108871895, 1, 2, 0.03719332118165497, 0.6322864600881345, -1, 2.424512101442888],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
163 [5.060461264473889, 3.907206872715648, 0, 6, 1, 0.009833301878435119, 0.9194137256336836, -1, 5.036505219288939],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
164 [1.564093384132049, 2.71825030952769, 0, 4, 1, 0.08422205061688548, 0.5833156839021328, -1, 2.624891001926885],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
165 [1.880766401658642, 2.386845406237341, 4.827515848459815, 5, 2, 0.5066727915134361, 0.8854935702150707, -1, 5.360477990755495],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
166 [1.59407475963904, 0.534285333759948, 0, 2, 0, 0.2552177150698158, 0.795428545300926, -1, 1.094003814191179],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
167 [0, 0.5430983302936986, 0, 1, 0, 0.2712472951886882, 0.6948389616477355, -1, 0.3840436547910877],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
168 [12.02717145181656, 0, 0, 2, 0, 0.9282479527131015, 1, -1, 5.403614570023904],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
169 [1.850001563738884, 0.5747051774882004, 3.088108715313044, 2, 3, 0.228475055238919, 0.7495585145557517, -1, 3.046392065578623],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
170 [3.803307245175641, 0, 0, 3, 1, 0.9067714294860527, 1, -1, 1.70876473546941],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
171 [0.721641417019702, 1.883081788749646, 7.124837113995454, 2, 4, 0.3686486553351745, 0.7180968598716421, -1, 5.829101111521283],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
172 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
173 [1.712968751786537, 9.336669329474105, 0, 5, 1, 0.08529549863060126, 0.5696520801400869, -1, 7.371891812181655],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
174 [0, 0.5352619259012723, 0, 1, 0, 0.2822849884472398, 0.6855492576575823, -1, 0.378502261611586],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
175 [1.533484063251527, 0.7938811016596651, 0, 1, 1, 0.1164760283828613, 0.6050282585443073, -1, 1.250350555301741],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
176 [0, 3.497363539992511, 0, 4, 0, 0.06943013457416836, 0.5644971811030209, -1, 2.473106988389141],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
177 [1.020485454623811, 1.0928127705755, 0, 2, 1, 0.3132480634350011, 0.6891457395570024, -1, 1.231253481530235],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
178 [0, 0.4609894819711267, 12.67245050755628, 1, 4, 0.03839353137961843, 0.5982991973323871, -1, 7.748715659526805],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
179 [0, 1.320988783990702, 2.781474874699366, 2, 3, 0.4169260196835819, 0.7719323334735625, -1, 2.563332094192779],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
180 [149.7570803411987, 2.335110998428668, 0.6467452710031769, 3, 1, 0.369794256323729, 0.7129023292014157, -1, 69.31350715083461],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
181 [0.9509614505415391, 1.908796635466585, 0, 3, 1, 0.04953789626422545, 0.514643700078342, -1, 1.777027940751451],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
182 [1.184426372207718, 1.836230603975953, 4.469545752284581, 3, 4, 0.4186649093702789, 0.7675523338455112, -1, 4.448588172231947],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
183 [0.5560118738244804, 2.456570195349719, 0, 5, 0, 0.149051686322846, 0.6334696668720957, -1, 1.986933123876089],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
184 [5.401180234593744, 3.066520525347463, 0.436035476378648, 4, 1, 0.1235293776154336, 0.6243241517320562, -1, 4.850508798121204],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
185 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
186 [0.594394216856557, 1.500373722448286, 0, 3, 0, 0.04744339974507994, 0.5914610501553299, -1, 1.328018022213997],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
187 [0, 1.00386607644946, 0, 2, 0, 0.1242856632669779, 0.5959338213057658, -1, 0.7098684997097175],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
188 [0.9858156621768633, 1.230360024686975, 0, 3, 0, 0.253715634087487, 0.8041495521077977, -1, 1.312941332942153],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
189 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
190 [0, 0, 0, 1, 1, 1, 1, 1, 0],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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191 [2.849251325322419, 0.4539288515966669, 1.440863428624558, 2, 2, 0.3606776103250359, 0.7252334745245345, -1, 2.445079849151379]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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192 ]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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193 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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194 "headers": [
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
195 ["alpha", "Synonymous substitution rate at a site"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
196 ["beta (leaf)", "Non-synonymous substitution rate at a site for leaf branches"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
197 ["beta (internal)", "Non-synonymous substitution rate at a site for internal branches"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
198 ["subs (leaf)", "Substitutions mapped to leaf branches"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
199 ["subs (internal)", "Substitutions mapped to internal branches"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
200 ["P-value (overall)", "P-value for the test that non-synonymous rates differ between any of the selected groups: leaf,internal"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
201 ["Q-value (overall)", "Q-value for the test that non-synonymous rates differ between any of the selected groups: leaf,internal"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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202 ["Permutation p-value", "Label permutation test for significant sites"],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
203 ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale beta-alpha"]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
204 ]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
205 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
206 "analysis":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
207 "authors":"Sergei L Kosakovsky Pond and Steven Weaver",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
208 "citation":"TBD",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
209 "contact":"spond@temple.edu",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
210 "help":"http://www.hyphy.org/methods/other/contrast-fel/",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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211 "info":"Contrast-FEL (Fixed Effects Likelihood) investigates whether or not selective pressures differ between two or more sets of\n branches at a site. Site-specific synonymous (alpha) and non-synonymous (beta, one per branch set) substitution rates are estimated\n and then beta rates are tested for equality at each site. LRT and permutation tests ar used to assess significance at each site, and FDR is applied alignment wide to call sites with different selective profiles",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
212 "requirements":"in-frame codon alignment and a phylogenetic tree; only single partition data are supported",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
213 "version":"0.5"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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214 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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215 "branch attributes":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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216 "0":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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217 "Baboon":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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218 "Global MG94xREV":0.00174723192666697,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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219 "Nucleotide GTR":0.001680040630127455,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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220 "original name":"Baboon"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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221 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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222 "Cat":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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223 "Global MG94xREV":0.2766003372098463,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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224 "Nucleotide GTR":0.2660909938917123,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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225 "original name":"Cat"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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226 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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227 "Chimp":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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228 "Global MG94xREV":0.001830140161785499,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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229 "Nucleotide GTR":0.001818373670119325,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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230 "original name":"Chimp"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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231 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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232 "Cow":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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233 "Global MG94xREV":0.2512572530183805,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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234 "Nucleotide GTR":0.2481025999892287,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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235 "original name":"Cow"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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236 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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237 "Horse":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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238 "Global MG94xREV":0.2146526643681058,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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239 "Nucleotide GTR":0.2090310577070883,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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240 "original name":"Horse"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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241 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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242 "Human":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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243 "Global MG94xREV":0,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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244 "Nucleotide GTR":0,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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245 "original name":"Human"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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246 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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247 "Mouse":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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248 "Global MG94xREV":0.1196529267467225,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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249 "Nucleotide GTR":0.1180171198334285,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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250 "original name":"Mouse"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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251 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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252 "Node1":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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253 "Global MG94xREV":0.2867621941821688,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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254 "Nucleotide GTR":0.2767237570684924
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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255 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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256 "Node12":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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257 "Global MG94xREV":0.01761131890611436,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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258 "Nucleotide GTR":0.01784803874223016
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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259 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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260 "Node2":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
261 "Global MG94xREV":0.06219797728198844,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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262 "Nucleotide GTR":0.06613162123865737
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
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263 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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264 "Node3":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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265 "Global MG94xREV":0.09597116861714063,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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266 "Nucleotide GTR":0.09886326330774685
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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267 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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268 "Node8":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
269 "Global MG94xREV":0.1106045193971755,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
270 "Nucleotide GTR":0.106239268140425
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
271 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
272 "Node9":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
273 "Global MG94xREV":0.02619890351105751,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
274 "Nucleotide GTR":0.02566573875750134
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
275 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
276 "Pig":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
277 "Global MG94xREV":0.1934958194962019,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
278 "Nucleotide GTR":0.1871893456388788,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
279 "original name":"Pig"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
280 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
281 "Rat":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
282 "Global MG94xREV":0.06790438491245605,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
283 "Nucleotide GTR":0.06661283005976348,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
284 "original name":"Rat"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
285 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
286 "RhMonkey":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
287 "Global MG94xREV":0.003743023039574662,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
288 "Nucleotide GTR":0.003775170135617877,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
289 "original name":"RhMonkey"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
290 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
291 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
292 "attributes":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
293 "Global MG94xREV":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
294 "attribute type":"branch length",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
295 "display order":1
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
296 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
297 "Nucleotide GTR":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
298 "attribute type":"branch length",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
299 "display order":0
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
300 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
301 "original name":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
302 "attribute type":"node label",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
303 "display order":-1
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
304 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
305 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
306 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
307 "data partitions":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
308 "0":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
309 "coverage": [
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
310 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
311 ],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
312 "name":"fel.filter.default"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
313 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
314 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
315 "fits":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
316 "Global MG94xREV":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
317 "AIC-c":6991.186386461754,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
318 "Equilibrium frequencies": [
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
319 [0.04876086397632926],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
320 [0.03982224127745371],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
321 [0.0494959405650269],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
322 [0.04152830682371345],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
324 [0.01478480742075003],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
325 [0.01837636270304883],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
326 [0.01541821854326533],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
327 [0.01892910005547028],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
328 [0.01545910240515689],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
330 [0.01612140169177368],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
331 [0.02829747763884322],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
332 [0.02311011106415996],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
333 [0.02872406592369408],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
334 [0.02410019507229243],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
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diff changeset
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ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
355 [0.01235507229404208],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
356 [0.01009019590244688],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
357 [0.01254132667213156],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
358 [0.01052248035033209],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
359 [0.01291855364640413],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
360 [0.01055038238273567],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
361 [0.01311330258173711],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
362 [0.01100238215235291],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
363 [0.01931219560697892],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
364 [0.0157719705998612],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
365 [0.01960332955558842],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
366 [0.01644767379420349],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
367 [0.01965132601881859],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
368 [0.02049322866376102],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
369 [0.008933621043463411],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
370 [0.007295949736387736],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
371 [0.009068296583349953],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
372 [0.007608523013862737],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
373 [0.007628698224327205],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
374 [0.009481877006094248],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
375 [0.00795552712159237],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
376 [0.01396413011303752],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
377 [0.01140428846505027],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
378 [0.01417464125436193],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
379 [0.01189287130232129]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
380 ],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
381 "Log Likelihood":-3463.018342931476,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
382 "Rate Distributions":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
383 "non-synonymous/synonymous rate ratio for *internal*": [
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
384 [0.6757243377045866, 1]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
385 ],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
386 "non-synonymous/synonymous rate ratio for *leaf*": [
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
387 [1.251739840537981, 1]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
388 ]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
389 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
390 "display order":1,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
391 "estimated parameters":32
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
392 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
393 "Nucleotide GTR":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
394 "AIC-c":7112.857310169033,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
395 "Equilibrium frequencies": [
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
396 [0.3592490842490842],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
397 [0.181959706959707],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
398 [0.240018315018315],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
399 [0.2187728937728937]
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
400 ],
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
401 "Log Likelihood":-3532.32122446679,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
402 "Rate Distributions":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
403 "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
404 "Substitution rate from nucleotide A to nucleotide G":1,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
405 "Substitution rate from nucleotide A to nucleotide T":0.2647746107611847,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
406 "Substitution rate from nucleotide C to nucleotide G":0.4917423221832032,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
407 "Substitution rate from nucleotide C to nucleotide T":1.02837595903795,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
408 "Substitution rate from nucleotide G to nucleotide T":0.304509117524575
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
409 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
410 "display order":0,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
411 "estimated parameters":24
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
412 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
413 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
414 "input":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
415 "file name":"/tmp/tmp29yw9zzo/job_working_directory/000/3/working/cfel_input.fa",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
416 "number of sequences":10,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
417 "number of sites":187,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
418 "partition count":1,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
419 "trees":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
420 "0":"((((Pig:0.147969,Cow:0.21343)Node3:0.08509899999999999,Horse:0.165787,Cat:0.264806)Node2:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node9:0.022733,(Human:0.004349,Chimp:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,Rat:0.050958,Mouse:0.09795)"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
421 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
422 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
423 "tested":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
424 "0":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
425 "Baboon":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
426 "Cat":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
427 "Chimp":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
428 "Cow":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
429 "Horse":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
430 "Human":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
431 "Mouse":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
432 "Node1":"internal",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
433 "Node12":"internal",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
434 "Node2":"internal",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
435 "Node3":"internal",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
436 "Node8":"internal",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
437 "Node9":"internal",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
438 "Pig":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
439 "Rat":"leaf",
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
440 "RhMonkey":"leaf"
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
441 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
442 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
443 "timers":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
diff changeset
444 "FEL analysis":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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445 "order":2,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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446 "timer":180
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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447 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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448 "Model fitting":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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449 "order":1,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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450 "timer":13
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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451 },
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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452 "Total time":{
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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453 "order":0,
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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454 "timer":193
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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455 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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456 }
ede53272264e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
iuc
parents:
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457 }