Mercurial > repos > iuc > hyphy_bgm

comparison hyphy_bgm.xml @ 2:f2c6ada85b41 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4"
author iuc
date Fri, 14 Feb 2020 16:43:36 -0500
parents cdfa1afd7cb0
children 1df765cc6bcb
comparison
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1:cdfa1afd7cb0 2:f2c6ada85b41
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="hyphy_bgm" name="HyPhy-BGM" version="@VERSION@+galaxy0"> 2 <tool id="hyphy_bgm" name="HyPhy-BGM" version="@VERSION@+galaxy1">
3 <description>- Detecting coevolving sites via Bayesian graphical models</description> 3 <description>- Detecting coevolving sites via Bayesian graphical models</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 ln -s '$input_file' bgm_input.fa && 9 ln -s '$input_file' bgm_input.fa &&
10 ln -s '$input_nhx' bgm_input.nhx && 10 ln -s '$input_nhx' bgm_input.nhx &&
11 @HYPHY_INVOCATION@ bgm 11 hyphy bgm
12 --alignment ./bgm_input.fa 12 --alignment ./bgm_input.fa
13 --tree ./bgm_input.nhx 13 --tree ./bgm_input.nhx
14 --run_type $datatype.value 14 --run_type $datatype.value
15 #if $datatype.value == "codon": 15 #if $datatype.value == "codon":
16 --code '$datatype.gencodeid' 16 --code '$datatype.gencodeid'