Mercurial > repos > iuc > hyphy_bgm
diff macros.xml @ 33:5b6b8b08f1a9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
author | iuc |
---|---|
date | Wed, 30 Mar 2022 00:17:25 +0000 |
parents | 12c2453e5040 |
children | 35723f87964d |
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--- a/macros.xml Sat Nov 27 11:28:17 2021 +0000 +++ b/macros.xml Wed Mar 30 00:17:25 2022 +0000 @@ -1,5 +1,6 @@ <?xml version="1.0"?> <macros> + <token name="@TOOL_VERSION@">2.5.36</token> <xml name="inputs"> <param name="input_file" type="data" format="fasta,fasta.gz,nex" label="Input FASTA or NEXUS file" help="If the input file type is NEXUS and it includes a valid newick tree, that tree will override an uploaded newick tree" /> <param name="input_nhx" type="data" format="nhx,newick" optional="true" label="Input newick file"/> @@ -144,7 +145,6 @@ <yield/> </citations> </xml> - <token name="@TOOL_VERSION@">2.5.31</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">hyphy</requirement> @@ -156,6 +156,16 @@ <filter>advanced['save_alternative_model']</filter> </data> </xml> + <xml name="resample"> + <param argument="--resample" type="integer" value="0" min="0" optional="true" label="Perform parametric bootstrap resampling to derive site-level null LRT distributions" help="Warning: This will result in a significantly slower analysis. This parameter specifies the maximum number of replicates per site." /> + </xml> + <token name="@resample@"><![CDATA[ + #if $resample: + --resample $resample + #end if + ]]> + </token> + <token name="@INPUT_TREE@"><![CDATA[ #if $input_nhx: --tree input.nhx