Mercurial > repos > iuc > hyphy_conv

comparison test-data/summary/nsp8-segment.json @ 3:01d10bfc5158 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
author iuc
date Wed, 09 Jun 2021 07:01:31 +0000
parents
children 6569d04885e5
comparison
equal deleted inserted replaced
2:f6e7b5955712 3:01d10bfc5158
1 {
2 "nsp8": {
3 "map": [],
4 "rates": {
5 "mean-omega": {
6 "B-1-617": 21.18256593595067,
7 "Reference": 0,
8 "background": 0.5156677174296214
9 },
10 "T": {
11 "B-1-617": 0.003269500911862614,
12 "Reference": 0.001919664151147453,
13 "background": 0.10664581418249912
14 },
15 "relax": {
16 "B-1-617": [
17 {
18 "omega": 0,
19 "proportion": 0.3229316344832856
20 },
21 {
22 "omega": 0,
23 "proportion": 0.6561871399951409
24 },
25 {
26 "omega": 887.8019782663979,
27 "proportion": 0.02088122552157349
28 }
29 ],
30 "Reference": [
31 {
32 "omega": 0,
33 "proportion": 0.3229316344832856
34 },
35 {
36 "omega": 0,
37 "proportion": 0.6561871399951409
38 },
39 {
40 "omega": 887.8019782663979,
41 "proportion": 0.02088122552157349
42 }
43 ],
44 "background": [
45 {
46 "omega": 0,
47 "proportion": 0.3229316344832856
48 },
49 {
50 "omega": 0,
51 "proportion": 0.6561871399951409
52 },
53 {
54 "omega": 2.618905128891877,
55 "proportion": 0.02088122552157349
56 }
57 ]
58 },
59 "busted": {
60 "Background": {
61 "0": {
62 "omega": 0,
63 "proportion": 0.02741862862724963
64 },
65 "1": {
66 "omega": 0.1719979491289183,
67 "proportion": 0.8111826871363725
68 },
69 "2": {
70 "omega": 2.232058479326601,
71 "proportion": 0.1613986842363778
72 }
73 },
74 "Synonymous site-to-site rates": {
75 "0": {
76 "proportion": 0,
77 "rate": 0.9502886367487763
78 },
79 "1": {
80 "proportion": 1,
81 "rate": 1
82 },
83 "2": {
84 "proportion": 0,
85 "rate": 1.059678592887729
86 }
87 },
88 "Test": {
89 "0": {
90 "omega": 0.9993684330797956,
91 "proportion": 0
92 },
93 "1": {
94 "omega": 0.999368433118802,
95 "proportion": 0
96 },
97 "2": {
98 "omega": 25.32658549655282,
99 "proportion": 1
100 }
101 }
102 }
103 },
104 "relax": {
105 "p": 0.07260318641568564,
106 "K": 7.051367447513434
107 },
108 "busted": {
109 "p": 0.3056667368082906
110 },
111 "tree": "(REFERENCE,(gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human,epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021)Node20,gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human,epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021,(epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021,gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human)Node4,epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021,gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human,gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human,epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021,gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human,(gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human,gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human,epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021)Node38,epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021,gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human,epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021,gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human,epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021,epi_isl_1543980_hCoV_19_Singapore_490_2021,epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021,gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human,epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021,gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human,gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human,epi_isl_1652118_hCoV_19_Singapore_575_2021,epi_isl_1652105_hCoV_19_Singapore_561_2021,gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human,gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human,epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021,epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021)",
112 "tree_tags": {},
113 "prime-properties": [
114 "Factor I bipolar",
115 "Factor II secondary structure",
116 "Factor III volume",
117 "Factor IV composition",
118 "Factor V charge"
119 ],
120 "bgm": []
121 }
122 }