Mercurial > repos > iuc > hyphy_conv

comparison hyphy_conv.xml @ 2:f6e7b5955712 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
author iuc
date Tue, 27 Apr 2021 18:02:47 +0000
parents c1d24ff838c8
children 079ea2eb9ae4
comparison
equal deleted inserted replaced
1:c1d24ff838c8 2:f6e7b5955712
10 hyphy conv 10 hyphy conv
11 '$gencodeid' 11 '$gencodeid'
12 '$deletions' 12 '$deletions'
13 conv_input.fa 13 conv_input.fa
14 aa.nex 14 aa.nex
15 > ./conv.log
16 @ERRORS@ 15 @ERRORS@
17 ]]></command> 16 ]]></command>
18 <inputs> 17 <inputs>
19 <param name="input_file" type="data" format="fasta" label="Input codon alignment"/> 18 <param name="input_file" type="data" format="fasta" label="Input codon alignment"/>
20 <param name="save_log" type="boolean" truevalue="Yes" falsevalue="No" checked="false" label="Save the conversion log to your history" />
21 <expand macro="gencode"/> 19 <expand macro="gencode"/>
22 <param name="deletions" type="boolean" truevalue="Keep Deletions" falsevalue="Skip Deletions" label="Keep deletions" help="If this is checked, deletions will be left in the output file"/> 20 <param name="deletions" type="boolean" truevalue="Keep Deletions" falsevalue="Skip Deletions" label="Keep deletions" help="If this is checked, deletions will be left in the output file"/>
23 </inputs> 21 </inputs>
24 <outputs> 22 <outputs>
25 <data name="conv_log" format="txt" from_work_dir="conv.log">
26 <filter>save_log</filter>
27 </data>
28 <data name="proteins" format="nex" from_work_dir="aa.nex" /> 23 <data name="proteins" format="nex" from_work_dir="aa.nex" />
29 </outputs> 24 </outputs>
30 <tests> 25 <tests>
31 <test> 26 <test>
32 <param name="input_file" ftype="fasta" value="conv-in1.fa"/> 27 <param name="input_file" ftype="fasta" value="conv-in1.fa"/>