Mercurial > repos > iuc > hyphy_fade

annotate test-data/summary/nsp8.RELAX.json @ 33:a73fff151e38 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 821e0f3e4546bc55e093ab63bd9f9b57f2bf772d
author iuc
date Thu, 18 Aug 2022 14:04:52 +0000
parents 60eec78ee26f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
26
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
1 {
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iuc
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2 "Synonymous site-posteriors": [
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iuc
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diff changeset
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60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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iuc
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6 ],
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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7 "analysis":0,
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8 "branch attributes":{
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9 "0":{
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10 "Node20":{
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12 "Nucleotide GTR":0.001684521619549293,
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iuc
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diff changeset
13 "RELAX alternative":0.001888715982590274,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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14 "RELAX null":0.001729201145341893
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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15 },
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16 "Node38":{
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18 "Nucleotide GTR":0.00168484920326581,
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19 "RELAX alternative":0.001886373803275281,
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20 "RELAX null":0.001757668602191916
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21 },
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22 "Node4":{
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24 "Nucleotide GTR":0.001683801387489096,
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25 "RELAX alternative":0.001736927843216757,
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26 "RELAX null":0.001719649158870973
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27 },
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diff changeset
28 "REFERENCE":{
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29 "MG94xREV with separate rates for branch sets":0,
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30 "Nucleotide GTR":0,
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31 "RELAX alternative":0,
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32 "RELAX null":0,
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33 "original name":"REFERENCE"
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34 },
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36 "MG94xREV with separate rates for branch sets":0,
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37 "Nucleotide GTR":0,
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38 "RELAX alternative":0,
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39 "RELAX null":0,
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iuc
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diff changeset
40 "original name":"epi_isl_1181694/hCoV-19/USA/DE-DHSS-B1064373/2021"
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41 },
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42 "epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021":{
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44 "Nucleotide GTR":0.001682745450340891,
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45 "RELAX alternative":0.001737560358174388,
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46 "RELAX null":0.001737701430364698,
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47 "original name":"epi_isl_1357692/hCoV-19/India/WB-1931500870015/2021"
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48 },
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51 "Nucleotide GTR":0,
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54 "original name":"epi_isl_1384851/hCoV-19/India/MH-NCCS-ND13683/2021"
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55 },
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58 "Nucleotide GTR":0.00168274558227101,
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60 "RELAX null":0.001721507731204673,
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61 "original name":"epi_isl_1415270/hCoV-19/India/MH-NCCS-BJ2/2021"
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62 },
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65 "Nucleotide GTR":0.001684401404203384,
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66 "RELAX alternative":0.00172720734036594,
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67 "RELAX null":0.001726404293760867,
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68 "original name":"epi_isl_1416968/hCoV-19/Guadeloupe/IPP06229/2021"
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69 },
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72 "Nucleotide GTR":0.00168406792173386,
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iuc
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iuc
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diff changeset
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iuc
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iuc
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iuc
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diff changeset
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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diff changeset
103 "original name":"epi_isl_1589870/hCoV-19/India/WB-1931501009078/2021"
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104 },
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iuc
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105 "epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021":{
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iuc
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107 "Nucleotide GTR":0.001684431017860219,
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iuc
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iuc
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iuc
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diff changeset
110 "original name":"epi_isl_1589885/hCoV-19/India/WB-1931300250528/2021"
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111 },
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iuc
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112 "epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021":{
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iuc
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iuc
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iuc
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117 "original name":"epi_isl_1592421/hCoV-19/USA/MA-CDC-STM-000044850/2021"
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iuc
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118 },
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iuc
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119 "epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021":{
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121 "Nucleotide GTR":0,
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iuc
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iuc
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diff changeset
124 "original name":"epi_isl_1615709/hCoV-19/England/CAMC-14E792B/2021"
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125 },
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iuc
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126 "epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021":{
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iuc
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128 "Nucleotide GTR":0.00168443927661716,
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iuc
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iuc
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iuc
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diff changeset
131 "original name":"epi_isl_1632256/hCoV-19/England/RAND-14E1D70/2021"
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iuc
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132 },
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iuc
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133 "epi_isl_1652105_hCoV_19_Singapore_561_2021":{
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iuc
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135 "Nucleotide GTR":0.001685171120971631,
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iuc
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iuc
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iuc
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diff changeset
138 "original name":"epi_isl_1652105/hCoV-19/Singapore/561/2021"
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139 },
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iuc
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140 "epi_isl_1652118_hCoV_19_Singapore_575_2021":{
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142 "Nucleotide GTR":0.001684401899924961,
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iuc
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diff changeset
145 "original name":"epi_isl_1652118/hCoV-19/Singapore/575/2021"
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146 },
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iuc
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147 "gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human":{
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149 "Nucleotide GTR":0.01020457779555702,
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150 "RELAX alternative":0.01047086585093888,
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iuc
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iuc
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152 "original name":"gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human"
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iuc
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153 },
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iuc
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154 "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human":{
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155 "MG94xREV with separate rates for branch sets":0.02680857528731593,
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iuc
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iuc
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159 "original name":"gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human"
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iuc
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161 "gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human":{
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166 "original name":"gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human"
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168 "gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human":{
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175 "gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human":{
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189 "gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human":{
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196 "gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human":{
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203 "gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human":{
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iuc
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iuc
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208 "original name":"gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human"
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iuc
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209 },
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iuc
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210 "gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human":{
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iuc
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iuc
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215 "original name":"gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human"
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216 },
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iuc
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217 "gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human":{
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222 "original name":"gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human"
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224 "gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human":{
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229 "original name":"gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human"
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diff changeset
231 "gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human":{
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iuc
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diff changeset
232 "MG94xREV with separate rates for branch sets":0.003465962437529985,
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iuc
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diff changeset
233 "Nucleotide GTR":0.003376034743011948,
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iuc
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diff changeset
234 "RELAX alternative":0.003505853316276177,
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iuc
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diff changeset
235 "RELAX null":0.00350745511719164,
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iuc
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diff changeset
236 "original name":"gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human"
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iuc
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diff changeset
237 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
238 "gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human":{
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diff changeset
239 "MG94xREV with separate rates for branch sets":0.003468563552578822,
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iuc
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diff changeset
240 "Nucleotide GTR":0.003374190741831846,
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iuc
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diff changeset
241 "RELAX alternative":0.003507645115982479,
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iuc
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diff changeset
242 "RELAX null":0.003508905377887805,
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iuc
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diff changeset
243 "original name":"gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human"
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iuc
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diff changeset
244 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
245 "gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human":{
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iuc
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diff changeset
247 "Nucleotide GTR":0.003376937492543959,
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iuc
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diff changeset
248 "RELAX alternative":0.003504702597413055,
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iuc
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diff changeset
249 "RELAX null":0.003506633016642548,
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iuc
parents:
diff changeset
250 "original name":"gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human"
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iuc
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diff changeset
251 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
252 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
253 "attributes":{
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iuc
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254 "MG94xREV with separate rates for branch sets":{
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iuc
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diff changeset
255 "attribute type":"branch length",
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iuc
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diff changeset
256 "display order":1
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iuc
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diff changeset
257 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
258 "Nucleotide GTR":{
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iuc
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diff changeset
259 "attribute type":"branch length",
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iuc
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diff changeset
260 "display order":0
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iuc
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diff changeset
261 },
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iuc
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diff changeset
262 "RELAX alternative":{
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iuc
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diff changeset
263 "attribute type":"branch length",
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diff changeset
264 "display order":2
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265 },
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iuc
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266 "RELAX null":{
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iuc
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diff changeset
267 "attribute type":"branch length",
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268 "display order":3
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269 },
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iuc
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270 "original name":{
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iuc
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diff changeset
271 "attribute type":"node label",
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272 "display order":-1
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273 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
274 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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275 },
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iuc
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diff changeset
276 "data partitions":{
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277 "0":{
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iuc
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diff changeset
278 "coverage": [
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diff changeset
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iuc
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diff changeset
280 ],
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diff changeset
281 "name":"relax.filter.default"
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282 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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284 "fits":{
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287 "Equilibrium frequencies": [
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iuc
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diff changeset
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iuc
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iuc
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diff changeset
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diff changeset
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
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iuc
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diff changeset
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iuc
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341 [0.02433965804833868],
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iuc
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iuc
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iuc
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iuc
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iuc
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iuc
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347 [0.01093556617204019],
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iuc
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diff changeset
348 [0.02371882618448924]
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iuc
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diff changeset
349 ],
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
350 "Log Likelihood":-1204.057620165384,
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iuc
parents:
diff changeset
351 "Rate Distributions":{
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iuc
parents:
diff changeset
352 "non-synonymous/synonymous rate ratio for *Reference*": [
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iuc
parents:
diff changeset
353 [0, 1]
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
354 ],
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
355 "non-synonymous/synonymous rate ratio for *Test*": [
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iuc
parents:
diff changeset
356 [21.18256670135096, 1]
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iuc
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diff changeset
357 ],
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
358 "non-synonymous/synonymous rate ratio for *Unclassified*": [
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iuc
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diff changeset
359 [0.5156677179593993, 1]
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iuc
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diff changeset
360 ]
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
361 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
362 "display order":1,
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iuc
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diff changeset
363 "estimated parameters":52
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iuc
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diff changeset
364 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
365 "Nucleotide GTR":{
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iuc
parents:
diff changeset
366 "AIC-c":2633.0046471406,
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iuc
parents:
diff changeset
367 "Equilibrium frequencies": [
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iuc
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diff changeset
368 [0.3251262626262627],
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iuc
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diff changeset
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iuc
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diff changeset
370 [0.2026515151515151],
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iuc
parents:
diff changeset
371 [0.2922979797979798]
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iuc
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diff changeset
372 ],
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iuc
parents:
diff changeset
373 "Log Likelihood":-1247.247280799152,
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iuc
parents:
diff changeset
374 "Rate Distributions":{
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iuc
parents:
diff changeset
375 "Substitution rate from nucleotide A to nucleotide C":0,
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iuc
parents:
diff changeset
376 "Substitution rate from nucleotide A to nucleotide G":1,
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iuc
parents:
diff changeset
377 "Substitution rate from nucleotide A to nucleotide T":0.3101631549852981,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
378 "Substitution rate from nucleotide C to nucleotide G":1.129990583516242,
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iuc
parents:
diff changeset
379 "Substitution rate from nucleotide C to nucleotide T":2.723444388603395,
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iuc
parents:
diff changeset
380 "Substitution rate from nucleotide G to nucleotide T":1.720896006888861
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iuc
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diff changeset
381 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
382 "display order":0,
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iuc
parents:
diff changeset
383 "estimated parameters":69
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iuc
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diff changeset
384 },
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iuc
parents:
diff changeset
385 "RELAX alternative":{
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iuc
parents:
diff changeset
386 "AIC-c":2539.023758734034,
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iuc
parents:
diff changeset
387 "Log Likelihood":-1203.827668840701,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
388 "Rate Distributions":{
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iuc
parents:
diff changeset
389 "Reference":{
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iuc
parents:
diff changeset
390 "0":{
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iuc
parents:
diff changeset
391 "omega":0,
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iuc
parents:
diff changeset
392 "proportion":0.3229316344832856
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
393 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
394 "1":{
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iuc
parents:
diff changeset
395 "omega":0,
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iuc
parents:
diff changeset
396 "proportion":0.6561871399951409
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
397 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
398 "2":{
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iuc
parents:
diff changeset
399 "omega":2.618905128891877,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
400 "proportion":0.02088122552157349
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
401 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
402 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
403 "Synonymous site-to-site rates":{
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iuc
parents:
diff changeset
404 "0":{
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iuc
parents:
diff changeset
405 "proportion":0,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
406 "rate":0.8672539109745554
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
407 },
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iuc
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diff changeset
408 "1":{
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409 "proportion":1,
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410 "rate":1
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411 },
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412 "2":{
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413 "proportion":0,
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414 "rate":1.04385559910209
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415 }
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iuc
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diff changeset
416 },
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417 "Test":{
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iuc
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418 "0":{
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419 "omega":0,
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iuc
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diff changeset
420 "proportion":0.3229316344832856
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iuc
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421 },
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iuc
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422 "1":{
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423 "omega":0,
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iuc
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424 "proportion":0.6561871399951409
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iuc
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425 },
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iuc
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426 "2":{
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iuc
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427 "omega":887.8019782663979,
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iuc
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428 "proportion":0.02088122552157349
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diff changeset
429 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
430 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
431 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
432 "display order":2,
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iuc
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diff changeset
433 "estimated parameters":65
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iuc
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434 },
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iuc
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diff changeset
435 "RELAX null":{
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iuc
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diff changeset
436 "AIC-c":2540.205243445127,
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iuc
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diff changeset
437 "Log Likelihood":-1205.43925064937,
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iuc
parents:
diff changeset
438 "Rate Distributions":{
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iuc
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diff changeset
439 "Reference":{
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iuc
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diff changeset
440 "0":{
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iuc
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diff changeset
441 "omega":0.01761845549263694,
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iuc
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diff changeset
442 "proportion":0.1028887690453239
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iuc
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diff changeset
443 },
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iuc
parents:
diff changeset
444 "1":{
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iuc
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diff changeset
445 "omega":0.1789488803563501,
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iuc
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diff changeset
446 "proportion":0.8141260406522884
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iuc
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447 },
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iuc
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diff changeset
448 "2":{
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iuc
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diff changeset
449 "omega":5.480099329809248,
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iuc
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diff changeset
450 "proportion":0.08298519030238755
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iuc
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diff changeset
451 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
452 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
453 "Synonymous site-to-site rates":{
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iuc
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diff changeset
454 "0":{
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iuc
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diff changeset
455 "proportion":0,
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iuc
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diff changeset
456 "rate":0.8690455710978635
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iuc
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diff changeset
457 },
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iuc
parents:
diff changeset
458 "1":{
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iuc
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diff changeset
459 "proportion":1,
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iuc
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diff changeset
460 "rate":1
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iuc
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diff changeset
461 },
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iuc
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diff changeset
462 "2":{
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iuc
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diff changeset
463 "proportion":0,
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iuc
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diff changeset
464 "rate":1.043145103957073
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iuc
parents:
diff changeset
465 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
466 },
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iuc
parents:
diff changeset
467 "Test":{
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iuc
parents:
diff changeset
468 "0":{
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iuc
parents:
diff changeset
469 "omega":0.01761845549263694,
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iuc
parents:
diff changeset
470 "proportion":0.1028887690453239
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iuc
parents:
diff changeset
471 },
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iuc
parents:
diff changeset
472 "1":{
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iuc
parents:
diff changeset
473 "omega":0.1789488803563501,
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iuc
parents:
diff changeset
474 "proportion":0.8141260406522884
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iuc
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diff changeset
475 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
476 "2":{
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iuc
parents:
diff changeset
477 "omega":5.480099329809248,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
478 "proportion":0.08298519030238755
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iuc
parents:
diff changeset
479 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
480 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
481 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
482 "display order":3,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
483 "estimated parameters":64
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
484 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
485 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
486 "input":{
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iuc
parents:
diff changeset
487 "file name":"/home/aglucaci/SARS-CoV-2/clades/B-1-617/nsp8.combined.fas",
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iuc
parents:
diff changeset
488 "number of sequences":32,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
489 "number of sites":198,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
490 "partition count":1,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
491 "trees":{
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iuc
parents:
diff changeset
492 "0":"(REFERENCE,(gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human,epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021)Node20,gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human,epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021,(epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021,gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human)Node4,epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021,gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human,gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human,epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021,gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human,(gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human,gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human,epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021)Node38,epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021,gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human,epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021,gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human,epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021,epi_isl_1543980_hCoV_19_Singapore_490_2021,epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021,gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human,epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021,gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human,gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human,epi_isl_1652118_hCoV_19_Singapore_575_2021,epi_isl_1652105_hCoV_19_Singapore_561_2021,gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human,gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human,epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021,epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021)"
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
493 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
494 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
495 "test results":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
496 "LRT":3.223163617336922,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
497 "p-value":0.07260318641568564,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
498 "relaxation or intensification parameter":7.051367447513434
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
499 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
500 "tested":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
501 "0":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
502 "Node20":"Test",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
503 "Node38":"Reference",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
504 "Node4":"Test",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
505 "REFERENCE":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
506 "epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
507 "epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
508 "epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
509 "epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
510 "epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
511 "epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
512 "epi_isl_1543980_hCoV_19_Singapore_490_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
513 "epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
514 "epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
515 "epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
516 "epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
517 "epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
518 "epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
519 "epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
520 "epi_isl_1652105_hCoV_19_Singapore_561_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
521 "epi_isl_1652118_hCoV_19_Singapore_575_2021":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
522 "gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
523 "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
524 "gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
525 "gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
526 "gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
527 "gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
528 "gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
529 "gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
530 "gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
531 "gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
532 "gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
533 "gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
534 "gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
535 "gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human":"Unclassified",
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
536 "gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human":"Unclassified"
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
537 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
538 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
539 "timers":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
540 "Overall":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
541 "order":0,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
542 "timer":67
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
543 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
544 "Preliminary model fitting":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
545 "order":1,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
546 "timer":5
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
547 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
548 "RELAX alternative model fitting":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
549 "order":3,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
550 "timer":50
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
551 },
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
552 "RELAX null model fitting":{
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
553 "order":4,
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
554 "timer":12
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
555 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
556 }
60eec78ee26f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
557 }