comparison test-data/strike-ambigs-in1.fa @ 23:17ac281a46d9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
author iuc
date Tue, 20 Apr 2021 10:25:54 +0000
parents
children
comparison
equal deleted inserted replaced
22:c6355a5b0483 23:17ac281a46d9
1 >NC_045512.2:21563-25384
2 ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACC
3 AGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGAC
4 AAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCC
5 AATGTTACTTGGTTCCATGCTATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGAT
6 AACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA
7 ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCTACTTATTGTT
8 AATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTCAATTTTGTAATGATCCATTT
9 TTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTTTAT
10 TCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCAGCCTTTTCTTATGGACCTTGAA
11 GGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGTGTTTAAGAATATTGATGGTTAT
12 TTTAAAATATATTCTAAGCACACGCCTATTAATTTAGTGCGTGATCTCCCTCAGGGTTTT
13 TCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTATTAACATCACTAGGTTTCAAACT
14 TTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGATTCTTCTTCAGGTTGGACAGCT
15 GGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAGGACTTTTCTATTAAAATATAAT
16 GAAAATGGAACCATTACAGATGCTGTAGACTGTGCACTTGACCCTCTCTCAGAAACAAAG
17 TGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTATCAAACTTCTAACTTTAGAGTC
18 CAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTTGTGCCCTTTTGGTGAA
19 GTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTGGAACAGGAAGAGAATCAGCAAC
20 TGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATCATTTTCCACTTTTAAGTGTTAT
21 GGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTACTAATGTCTATGCAGATTCATTT
22 GTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGAT
23 TATAATTATAAATTACCAGATGATTTTACAGGCTGCGTTATAGCTTGGAATTCTAACAAT
24 CTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTATAGATTGTTTAGGAAGTCTAAT
25 CTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTATCAGGCCGGTAGCACACCTTGT
26 AATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCACT
27 AATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACTTTCTTTTGAACTTCTACATGCA
28 CCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAAATGTGTCAAT
29 TTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTACTGAGTCTAACAAAAAGTTTCTG
30 CCTTTCCAACAATTTGGCAGAGACATTGCTGACACTACTGATGCTGTCCGTGATCCACAG
31 ACACTTGAGATTCTTGACATTACACCATGTTCTTTTGGTGGTGTCAGTGTTATAACACCA
32 GGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCAGGATGTTAACTGCACAGAAGTC
33 CCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTGGCGTGTTTATTCTACAGGTTCT
34 AATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGCTGAACATGTCAACAACTCATAT
35 GAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAGTTATCAGACTCAGACTAATTCT
36 CCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCATTGCCTACACTATGTCACTTGGT
37 GCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGCCATACCCACAAATTTTACTATT
38 AGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATG
39 TACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTTGT
40 ACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGAACAAGACAAAAACACCCAAGAA
41 GTTTTTGCACAAGTCAAACAAATTTACAAAACACCACCAATTAAAGATTTTGGTGGTTTT
42 AATTTTTCACAAATATTACCAGATCCATCAAAACCAAGCAAGAGGTCATTTATTGAAGAT
43 CTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTTCATCAAACAATATGGTGATTGC
44 CTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACAAAAGTTTAACGGCCTTACTGTT
45 TTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATACACTTCTGCACTGTTAGCGGGT
46 ACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGCATTACAAATACCATTTGCTATG
47 CAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACAGAATGTTCTCTATGAGAACCAA
48 AAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAAAATTCAAGACTCACTTTCTTCC
49 ACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAACCAAAATGCACAAGCTTTAAAC
50 ACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAATTTCAAGTGTTTTAAATGATATC
51 CTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAATTGATAGGTTGATCACAGGCAGA
52 CTTCAAAGTTTGCAGACATATGTGACTCAACAATTAATTAGAGCTGCAGAAATCAGAGCT
53 TCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGTACTTGGACAATCAAAAAGAGTT
54 GATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTA
55 GTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAAGAACTTCACAACTGCTCCTGCC
56 ATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGGTGTCTTTGTTTCAAATGGCACA
57 CACTGGTTTGTAACACAAAGGAATTTTTATGAACCACAAATCATTACTACAGACAACACA
58 TTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGTCAACAACACAGTTTATGATCCT
59 TTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACA
60 TCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAA
61 AAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC
62 CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTGGCTAGGTTTT
63 ATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTTGC
64 TGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGAC
65 TCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA
66 >epi_isl_1041406/hCoV-19/USA/NY-PRL-2021_02_08_05H12/2021
67 ------------------------------------------------------------
68 ------------------------------------------------------------
69 ------------------------------------------------------------
70 ------------------------------------------------------------
71 ------------------------------------------------------------
72 ------------------------------------------------------------
73 ------------------------------------------------------------
74 ------------------------------------------------------------
75 ------------------------------------------------------------
76 ------------------------------------------------------------
77 ------------------------------------------------------------
78 ------------------------------------------------------------
79 ------------------------------------------------------------
80 ------------------------------------------------------------
81 ------------------------------------------------------------
82 ------------------------------------------------------------
83 ------------------------------------------------------------
84 ------------------------------------------------------------
85 ------------------------------------------------------------
86 ------------------------------------------------------------
87 ------------------------------------------------------------
88 ------------------------------------------------------------
89 ------------------------------------------------------------
90 ------------------------------------------------------------
91 ------------------------------------------------------------
92 ------------------------------------------------------------
93 ------------------------------------------------------------
94 ------------------------------------------------------------
95 ------------------------------------------------------------
96 ------------------------------------------------------------
97 ------------------------------------------------------------
98 ------------------------------------------------------------
99 ------------------------------------------------------------
100 ------------------------------------------------------------
101 ------------------------------------------------------------
102 ------------------------------------------------------------
103 ------------------------------------------------------------
104 ------------------------------------------------------------
105 ------------------------------------------------------------
106 ------------------------------------------------------------
107 ------------------------------------------------------------
108 ------------------------------------------------------------
109 ------------------------------------------------------------
110 ------------------------------------------------------------
111 ------------------------------------------------------------
112 ------------------------------------------------------------
113 ------------------------------------------------------------
114 ------------------------------------------------------------
115 ------------------------------------------------------------
116 ------------------------------------------------------------
117 ------------------------------------------------------------
118 ------------------------------------------------------------
119 ------------------------------------------------------------
120 ------------------------------------------------------------
121 ------------------------------------------------------------
122 ------------------------------------------------------------
123 ------------------------------------------------------------
124 ------------------------------------------------------------
125 ------------------------------------------------------------
126 ------------------------------------------------------------
127 ------------------------------------------------------------
128 ------------------------------------------------------------
129 ------------------------------------------------------------
130 --------------------------------CGAGACG
131 >epi_isl_1041400/hCoV-19/USA/NY-PRL-2021_02_08_05H02/2021
132 ------------------------------------------------------------
133 ------------------------------------------------------------
134 ------------------------------------------------------------
135 ------------------------------------------------------------
136 ------------------------------------------------------------
137 ------------------------------------------------------------
138 ------------------------------------------------------------
139 ------------------------------------------------------------
140 ------------------------------------------------------------
141 ------------------------------------------------------------
142 ------------------------------------------------------------
143 ------------------------------------------------------------
144 ------------------------------------------------------------
145 ------------------------------------------------------------
146 ------------------------------------------------------------
147 ------------------------------------------------------------
148 ------------------------------------------------------------
149 ------------------------------------------------------------
150 ------------------------------------------------------------
151 ------------------------------------------------------------
152 ------------------------------------------------------------
153 ------------------------------------------------------------
154 ------------------------------------------------------------
155 ------------------------------------------------------------
156 ------------------------------------------------------------
157 ------------------------------------------------------------
158 ------------------------------------------------------------
159 ------------------------------------------------------------
160 ------------------------------------------------------------
161 ------------------------------------------------------------
162 ------------------------------------------------------------
163 ------------------------------------------------------------
164 ------------------------------------------------------------
165 ------------------------------------------------------------
166 ------------------------------------------------------------
167 ------------------------------------------------------------
168 ------------------------------------------------------------
169 ------------------------------------------------------------
170 ------------------------------------------------------------
171 ------------------------------------------------------------
172 ------------------------------------------------------------
173 ------------------------------------------------------------
174 ------------------------------------------------------------
175 ------------------------------------------------------------
176 ------------------------------------------------------------
177 ------------------------------------------------------------
178 ------------------------------------------------------------
179 ------------------------------------------------------------
180 ------------------------------------------------------------
181 ------------------------------------------------------------
182 ------------------------------------------------------------
183 ------------------------------------------------------------
184 ------------------------------------------------------------
185 ------------------------------------------------------------
186 ------------------------------------------------------------
187 ------------------------------------------------------------
188 ------------------------------------------------------------
189 ------------------------------------------------------------
190 ------------------------------------------------------------
191 ------------------------------------------------------------
192 ------------------------------------------------------------
193 ------------------------------------------------------------
194 ------------------------------------------------------------
195 --------------------------------------A
196 >epi_isl_1041403/hCoV-19/USA/NY-PRL-2021_02_08_05H08/2021
197 ------------------------------------------------------------
198 ------------------------------------------------------------
199 ------------------------------------------------------------
200 ------------------------------------------------------------
201 ------------------------------------------------------------
202 ------------------------------------------------------------
203 ------------------------------------------------------------
204 ------------------------------------------------------------
205 ------------------------------------------------------------
206 ------------------------------------------------------------
207 ------------------------------------------------------------
208 ------------------------------------------------------------
209 ------------------------------------------------------------
210 ------------------------------------------------------------
211 ------------------------------------------------------------
212 ------------------------------------------------------------
213 ------------------------------------------------------------
214 ------------------------------------------------------------
215 ------------------------------------------------------------
216 ------------------------------------------------------------
217 ------------------------------------------------------------
218 ------------------------------------------------------------
219 ------------------------------------------------------------
220 ------------------------------------------------------------
221 ------------------------------------------------------------
222 ------------------------------------------------------------
223 ------------------------------------------------------------
224 ------------------------------------------------------------
225 ------------------------------------------------------------
226 ------------------------------------------------------------
227 ------------------------------------------------------------
228 ------------------------------------------------------------
229 ------------------------------------------------------------
230 ------------------------------------------------------------
231 ------------------------------------------------------------
232 ------------------------------------------------------------
233 ------------------------------------------------------------
234 ------------------------------------------------------------
235 ------------------------------------------------------------
236 ------------------------------------------------------------
237 ------------------------------------------------------------
238 ------------------------------------------------------------
239 ------------------------------------------------------------
240 ------------------------------------------------------------
241 ------------------------------------------------------------
242 ------------------------------------------------------------
243 ------------------------------------------------------------
244 ------------------------------------------------------------
245 ------------------------------------------------------------
246 ------------------------------------------------------------
247 ------------------------------------------------------------
248 ------------------------------------------------------------
249 ------------------------------------------------------------
250 ------------------------------------------------------------
251 ------------------------------------------------------------
252 ------------------------------------------------------------
253 ------------------------------------------------------------
254 ------------------------------------------------------------
255 ------------------------------------------------------------
256 ------------------------------------------------------------
257 ------------------------------------------------------------
258 ------------------------------------------------------------
259 ------------------------------------------------------------
260 --------------------------------------A