Mercurial > repos > iuc > hyphy_fade

comparison macros.xml @ 12:bf27b3df1a4f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2413d0043c5d263ecfa75ec0f8614e322fb65f99"
author iuc
date Fri, 08 May 2020 18:41:44 -0400
parents 7c41611bf5b7
children 048d3f9c9efc
comparison
equal deleted inserted replaced
11:7c41611bf5b7 12:bf27b3df1a4f
90 code</option> 90 code</option>
91 <option value="Blepharisma-Nuclear">Blepharisma Nuclear 91 <option value="Blepharisma-Nuclear">Blepharisma Nuclear
92 code</option> 92 code</option>
93 </param> 93 </param>
94 </xml> 94 </xml>
95
95 <xml name="branches"> 96 <xml name="branches">
96 <param name="branches" type="select" label="Set of branches to test"> 97 <param name="branches" type="select" label="Set of branches to test">
97 <option value="All">All branches</option> 98 <option value="All">All branches</option>
98 <option value="Internal">Internal branches</option> 99 <option value="Internal">Internal branches</option>
99 <option value="Leaves">Leaf branches</option> 100 <option value="Leaves">Leaf branches</option>
104 <citations> 105 <citations>
105 <citation type="doi">10.1093/molbev/msz197</citation> 106 <citation type="doi">10.1093/molbev/msz197</citation>
106 <yield/> 107 <yield/>
107 </citations> 108 </citations>
108 </xml> 109 </xml>
109 <token name="@VERSION@">2.5.12</token> 110 <token name="@VERSION@">2.5.14</token>
110 <xml name="requirements"> 111 <xml name="requirements">
111 <requirements> 112 <requirements>
112 <requirement type="package" version="@VERSION@">hyphy</requirement> 113 <requirement type="package" version="@VERSION@">hyphy</requirement>
113 <yield/> 114 <yield/>
114 </requirements> 115 </requirements>
122 exit \$EC 123 exit \$EC
123 ]]></token> 124 ]]></token>
124 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[ 125 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[
125 export HYPHY=`which hyphy` && 126 export HYPHY=`which hyphy` &&
126 export HYPHY_PATH=`dirname \$HYPHY` && 127 export HYPHY_PATH=`dirname \$HYPHY` &&
127 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> 128 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../share/hyphy` &&]]></token>
128 <token name="@HYPHY_INVOCATION@"><![CDATA[ 129 <token name="@HYPHY_INVOCATION@"><![CDATA[
129 @HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB 130 @HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB
130 ]]></token> 131 ]]></token>
131 </macros> 132 </macros>