Mercurial > repos > iuc > hyphy_fade
diff hyphy_fade.xml @ 25:5e8d0e777033 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
author | iuc |
---|---|
date | Tue, 27 Apr 2021 18:06:34 +0000 |
parents | 17ac281a46d9 |
children | 96817f0fd28b |
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--- a/hyphy_fade.xml Tue Apr 20 19:49:45 2021 +0000 +++ b/hyphy_fade.xml Tue Apr 27 18:06:34 2021 +0000 @@ -1,29 +1,24 @@ <?xml version="1.0"?> -<tool id="hyphy_fade" name="HyPhy-FADE" version="@VERSION@+galaxy0" profile="19.09"> +<tool id="hyphy_fade" name="HyPhy-FADE" version="@VERSION@+galaxy1" profile="19.09"> <description>: FUBAR* Approach to Directional Evolution (*Fast Unconstrained Bayesian Approximation)</description> <macros> <import>macros.xml</import> - <token name="@OPERATION@">FADE</token> - <token name="@operation@">fade</token> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ @SYMLINK_FILES@ hyphy fade - --alignment ./$input_file - #if $input_nhx: - --tree ./input.nhx - #end if - --branches '$branches' + --alignment $input_file + @INPUT_TREE@ + @branch_options@ --model '$model' --method '$posteriorEstimationMethod.method' --grid '$grid_points' --concentration_parameter '$concentration' @posteriorEstimationMethod_cmd@ --output '$fade_output' - > '$fade_log' ; - @CATCH_ERROR@ + @ERRORS@ ]]></command> <inputs> <expand macro="inputs"/> @@ -35,7 +30,6 @@ <param name="concentration" type="float" value="0.5" min="0.001" max="1" label="Concentration parameter of the Dirichlet prior"/> </inputs> <outputs> - <data name="fade_log" format="txt"/> <data name="fade_output" format="hyphy_results.json" /> </outputs> <tests>