Mercurial > repos > iuc > hyphy_fubar

annotate test-data/summary/nsp8.FEL.json @ 32:90e57f65ddd9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e74f0c1ed183da674db365c3a6ce320b0c08d9bc"
author iuc
date Sat, 27 Nov 2021 11:29:48 +0000
parents 8741542f9bc8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
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8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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diff changeset
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diff changeset
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diff changeset
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202 [0, 0, 0, -8.179636239447063e-06, 1, 0]
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diff changeset
203 ]
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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diff changeset
204 },
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diff changeset
205 "headers": [
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diff changeset
206 ["alpha", "Synonymous substitution rate at a site"],
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diff changeset
207 ["beta", "Non-synonymous substitution rate at a site"],
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diff changeset
208 ["alpha=beta", "The rate estimate under the neutral model"],
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iuc
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diff changeset
209 ["LRT", "Likelihood ration test statistic for beta = alpha, versus beta &neq; alpha"],
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iuc
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diff changeset
210 ["p-value", "Asymptotic p-value for evidence of selection, i.e. beta &neq; alpha"],
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iuc
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diff changeset
211 ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
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iuc
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diff changeset
212 ]
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
213 },
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diff changeset
214 "analysis":{
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diff changeset
215 "authors":"Sergei L Kosakovsky Pond and Simon DW Frost",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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diff changeset
216 "citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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diff changeset
217 "contact":"spond@temple.edu",
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iuc
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diff changeset
218 "info":"FEL (Fixed Effects Likelihood)\n estimates site-wise synonymous (α) and non-synonymous (β) rates, and\n uses a likelihood ratio test to determine if beta &neq; alpha at a site.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well, in which case an additional (nuisance) parameter will be\n inferred -- the non-synonymous rate on branches NOT selected for testing.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
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iuc
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diff changeset
219 "requirements":"in-frame codon alignment and a phylogenetic tree",
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220 "version":"2.1"
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221 },
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222 "branch attributes":{
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223 "0":{
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224 "Node20":{
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225 "Global MG94xREV":0.001634412620939209,
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226 "Nucleotide GTR":0.001684521619549293
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227 },
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228 "Node38":{
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229 "Global MG94xREV":0.001735516186079463,
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230 "Nucleotide GTR":0.00168484920326581
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231 },
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232 "Node4":{
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233 "Global MG94xREV":0.001634082124264937,
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234 "Nucleotide GTR":0.001683801387489096
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235 },
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236 "REFERENCE":{
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237 "Global MG94xREV":0,
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iuc
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diff changeset
238 "Nucleotide GTR":0,
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diff changeset
239 "original name":"REFERENCE"
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diff changeset
240 },
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diff changeset
241 "epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021":{
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diff changeset
242 "Global MG94xREV":0,
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243 "Nucleotide GTR":0,
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diff changeset
244 "original name":"epi_isl_1181694/hCoV-19/USA/DE-DHSS-B1064373/2021"
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245 },
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diff changeset
246 "epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021":{
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diff changeset
247 "Global MG94xREV":0.001732287231356377,
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iuc
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diff changeset
248 "Nucleotide GTR":0.001682745450340891,
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iuc
parents:
diff changeset
249 "original name":"epi_isl_1357692/hCoV-19/India/WB-1931500870015/2021"
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iuc
parents:
diff changeset
250 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
251 "epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021":{
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iuc
parents:
diff changeset
252 "Global MG94xREV":0,
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iuc
parents:
diff changeset
253 "Nucleotide GTR":0,
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iuc
parents:
diff changeset
254 "original name":"epi_isl_1384851/hCoV-19/India/MH-NCCS-ND13683/2021"
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iuc
parents:
diff changeset
255 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
256 "epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021":{
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iuc
parents:
diff changeset
257 "Global MG94xREV":0.001731614563238503,
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iuc
parents:
diff changeset
258 "Nucleotide GTR":0.00168274558227101,
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iuc
parents:
diff changeset
259 "original name":"epi_isl_1415270/hCoV-19/India/MH-NCCS-BJ2/2021"
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iuc
parents:
diff changeset
260 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
261 "epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021":{
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iuc
parents:
diff changeset
262 "Global MG94xREV":0.001735723694712937,
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iuc
parents:
diff changeset
263 "Nucleotide GTR":0.001684401404203384,
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iuc
parents:
diff changeset
264 "original name":"epi_isl_1416968/hCoV-19/Guadeloupe/IPP06229/2021"
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iuc
parents:
diff changeset
265 },
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iuc
parents:
diff changeset
266 "epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021":{
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iuc
parents:
diff changeset
267 "Global MG94xREV":0.001732400229866267,
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iuc
parents:
diff changeset
268 "Nucleotide GTR":0.00168406792173386,
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iuc
parents:
diff changeset
269 "original name":"epi_isl_1533793/hCoV-19/India/MH-NCCS-CHN21027888/2021"
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iuc
parents:
diff changeset
270 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
271 "epi_isl_1543980_hCoV_19_Singapore_490_2021":{
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iuc
parents:
diff changeset
272 "Global MG94xREV":0.001734572377168157,
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iuc
parents:
diff changeset
273 "Nucleotide GTR":0.001684975469042935,
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iuc
parents:
diff changeset
274 "original name":"epi_isl_1543980/hCoV-19/Singapore/490/2021"
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iuc
parents:
diff changeset
275 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
276 "epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021":{
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iuc
parents:
diff changeset
277 "Global MG94xREV":0.00173556721774995,
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iuc
parents:
diff changeset
278 "Nucleotide GTR":0.001684401583391051,
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iuc
parents:
diff changeset
279 "original name":"epi_isl_1544068/hCoV-19/India/MH-NCCS-RT231527/2021"
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iuc
parents:
diff changeset
280 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
281 "epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021":{
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iuc
parents:
diff changeset
282 "Global MG94xREV":0.001732287295543277,
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iuc
parents:
diff changeset
283 "Nucleotide GTR":0.001682745512695379,
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iuc
parents:
diff changeset
284 "original name":"epi_isl_1573247/hCoV-19/Germany/un-RKI-I-068985/2021"
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iuc
parents:
diff changeset
285 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
286 "epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021":{
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iuc
parents:
diff changeset
287 "Global MG94xREV":0,
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iuc
parents:
diff changeset
288 "Nucleotide GTR":0,
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iuc
parents:
diff changeset
289 "original name":"epi_isl_1589870/hCoV-19/India/WB-1931501009078/2021"
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iuc
parents:
diff changeset
290 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
291 "epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021":{
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iuc
parents:
diff changeset
292 "Global MG94xREV":0.001733756934810247,
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iuc
parents:
diff changeset
293 "Nucleotide GTR":0.001684431017860219,
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iuc
parents:
diff changeset
294 "original name":"epi_isl_1589885/hCoV-19/India/WB-1931300250528/2021"
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iuc
parents:
diff changeset
295 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
296 "epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021":{
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iuc
parents:
diff changeset
297 "Global MG94xREV":0.001733765377790725,
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iuc
parents:
diff changeset
298 "Nucleotide GTR":0.001684439221071522,
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iuc
parents:
diff changeset
299 "original name":"epi_isl_1592421/hCoV-19/USA/MA-CDC-STM-000044850/2021"
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iuc
parents:
diff changeset
300 },
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iuc
parents:
diff changeset
301 "epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021":{
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iuc
parents:
diff changeset
302 "Global MG94xREV":0,
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iuc
parents:
diff changeset
303 "Nucleotide GTR":0,
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iuc
parents:
diff changeset
304 "original name":"epi_isl_1615709/hCoV-19/England/CAMC-14E792B/2021"
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iuc
parents:
diff changeset
305 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
306 "epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021":{
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iuc
parents:
diff changeset
307 "Global MG94xREV":0.001736016204276856,
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iuc
parents:
diff changeset
308 "Nucleotide GTR":0.00168443927661716,
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iuc
parents:
diff changeset
309 "original name":"epi_isl_1632256/hCoV-19/England/RAND-14E1D70/2021"
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iuc
parents:
diff changeset
310 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
311 "epi_isl_1652105_hCoV_19_Singapore_561_2021":{
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iuc
parents:
diff changeset
312 "Global MG94xREV":0.001733699177045456,
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iuc
parents:
diff changeset
313 "Nucleotide GTR":0.001685171120971631,
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iuc
parents:
diff changeset
314 "original name":"epi_isl_1652105/hCoV-19/Singapore/561/2021"
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iuc
parents:
diff changeset
315 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
316 "epi_isl_1652118_hCoV_19_Singapore_575_2021":{
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iuc
parents:
diff changeset
317 "Global MG94xREV":0.001733317358386759,
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iuc
parents:
diff changeset
318 "Nucleotide GTR":0.001684401899924961,
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iuc
parents:
diff changeset
319 "original name":"epi_isl_1652118/hCoV-19/Singapore/575/2021"
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iuc
parents:
diff changeset
320 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
321 "gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
322 "Global MG94xREV":0.01050948252153795,
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iuc
parents:
diff changeset
323 "Nucleotide GTR":0.01020457779555702,
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iuc
parents:
diff changeset
324 "original name":"gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human"
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iuc
parents:
diff changeset
325 },
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iuc
parents:
diff changeset
326 "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
327 "Global MG94xREV":0.02683667587594947,
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iuc
parents:
diff changeset
328 "Nucleotide GTR":0.02592331511084145,
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iuc
parents:
diff changeset
329 "original name":"gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human"
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iuc
parents:
diff changeset
330 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
331 "gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
332 "Global MG94xREV":0.005257318397498607,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
333 "Nucleotide GTR":0.005093980037543817,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
334 "original name":"gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
335 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
336 "gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
337 "Global MG94xREV":0.003479916225811642,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
338 "Nucleotide GTR":0.003379296026417724,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
339 "original name":"gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
340 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
341 "gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
342 "Global MG94xREV":0.00346484907456443,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
343 "Nucleotide GTR":0.003372774424630234,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
344 "original name":"gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
345 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
346 "gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
347 "Global MG94xREV":0.003473329356219227,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
348 "Nucleotide GTR":0.003374190595560375,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
349 "original name":"gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
350 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
351 "gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
352 "Global MG94xREV":0.005214237519132295,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
353 "Nucleotide GTR":0.00505933790460295,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
354 "original name":"gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
355 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
356 "gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
357 "Global MG94xREV":0.003464011570187254,
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iuc
parents:
diff changeset
358 "Nucleotide GTR":0.003373764235314068,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
359 "original name":"gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
360 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
361 "gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
362 "Global MG94xREV":0.005236219940276191,
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iuc
parents:
diff changeset
363 "Nucleotide GTR":0.005068409188375663,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
364 "original name":"gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
365 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
366 "gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
367 "Global MG94xREV":0.003464842731605314,
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iuc
parents:
diff changeset
368 "Nucleotide GTR":0.003372774424770855,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
369 "original name":"gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
370 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
371 "gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
372 "Global MG94xREV":0.001735902734225727,
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iuc
parents:
diff changeset
373 "Nucleotide GTR":0.001686266012390882,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
374 "original name":"gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
375 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
376 "gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
377 "Global MG94xREV":0.003480097455920979,
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iuc
parents:
diff changeset
378 "Nucleotide GTR":0.003374436490976879,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
379 "original name":"gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
380 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
381 "gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
382 "Global MG94xREV":0.003472571057360136,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
383 "Nucleotide GTR":0.003376034743011948,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
384 "original name":"gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
385 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
386 "gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
387 "Global MG94xREV":0.003474988473611597,
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iuc
parents:
diff changeset
388 "Nucleotide GTR":0.003374190741831846,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
389 "original name":"gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
390 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
391 "gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human":{
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iuc
parents:
diff changeset
392 "Global MG94xREV":0.003471294890480852,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
393 "Nucleotide GTR":0.003376937492543959,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
394 "original name":"gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
395 }
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
396 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
397 "attributes":{
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
398 "Global MG94xREV":{
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iuc
parents:
diff changeset
399 "attribute type":"branch length",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
400 "display order":1
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
401 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
402 "Nucleotide GTR":{
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iuc
parents:
diff changeset
403 "attribute type":"branch length",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
404 "display order":0
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
405 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
406 "original name":{
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iuc
parents:
diff changeset
407 "attribute type":"node label",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
408 "display order":-1
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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diff changeset
409 }
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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diff changeset
410 }
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diff changeset
411 },
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diff changeset
412 "data partitions":{
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diff changeset
413 "0":{
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diff changeset
414 "coverage": [
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diff changeset
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8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
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diff changeset
416 ],
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diff changeset
417 "name":"fel.filter.default"
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diff changeset
418 }
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419 },
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diff changeset
420 "fits":{
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diff changeset
421 "Global MG94xREV":{
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diff changeset
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diff changeset
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486 "Log Likelihood":-1205.05897637469,
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487 "Rate Distributions":{
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488 "non-synonymous/synonymous rate ratio for *background*": [
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parents:
diff changeset
496 "estimated parameters":51
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
497 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
498 "Nucleotide GTR":{
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iuc
parents:
diff changeset
499 "AIC-c":2633.0046471406,
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iuc
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diff changeset
500 "Equilibrium frequencies": [
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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diff changeset
501 [0.3251262626262627],
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iuc
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diff changeset
502 [0.1799242424242424],
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iuc
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diff changeset
503 [0.2026515151515151],
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iuc
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diff changeset
504 [0.2922979797979798]
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iuc
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diff changeset
505 ],
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iuc
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diff changeset
506 "Log Likelihood":-1247.247280799152,
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iuc
parents:
diff changeset
507 "Rate Distributions":{
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iuc
parents:
diff changeset
508 "Substitution rate from nucleotide A to nucleotide C":0,
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iuc
parents:
diff changeset
509 "Substitution rate from nucleotide A to nucleotide G":1,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
510 "Substitution rate from nucleotide A to nucleotide T":0.3101631549852981,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
511 "Substitution rate from nucleotide C to nucleotide G":1.129990583516242,
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iuc
parents:
diff changeset
512 "Substitution rate from nucleotide C to nucleotide T":2.723444388603395,
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iuc
parents:
diff changeset
513 "Substitution rate from nucleotide G to nucleotide T":1.720896006888861
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iuc
parents:
diff changeset
514 },
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iuc
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diff changeset
515 "display order":0,
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iuc
parents:
diff changeset
516 "estimated parameters":69
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iuc
parents:
diff changeset
517 }
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
518 },
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iuc
parents:
diff changeset
519 "input":{
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iuc
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diff changeset
520 "file name":"/home/aglucaci/SARS-CoV-2/clades/B-1-617/nsp8.combined.fas",
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iuc
parents:
diff changeset
521 "number of sequences":32,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
522 "number of sites":198,
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iuc
parents:
diff changeset
523 "partition count":1,
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iuc
parents:
diff changeset
524 "trees":{
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iuc
parents:
diff changeset
525 "0":"(REFERENCE,(gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human,epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021)Node20,gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human,epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021,(epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021,gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human)Node4,epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021,gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human,gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human,epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021,gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human,(gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human,gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human,epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021)Node38,epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021,gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human,epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021,gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human,epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021,epi_isl_1543980_hCoV_19_Singapore_490_2021,epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021,gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human,epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021,gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human,gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human,epi_isl_1652118_hCoV_19_Singapore_575_2021,epi_isl_1652105_hCoV_19_Singapore_561_2021,gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human,gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human,epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021,epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021)"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
526 }
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
527 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
528 "tested":{
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iuc
parents:
diff changeset
529 "0":{
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iuc
parents:
diff changeset
530 "Node20":"test",
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iuc
parents:
diff changeset
531 "Node38":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
532 "Node4":"test",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
533 "REFERENCE":"background",
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iuc
parents:
diff changeset
534 "epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021":"background",
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iuc
parents:
diff changeset
535 "epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021":"background",
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iuc
parents:
diff changeset
536 "epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021":"background",
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iuc
parents:
diff changeset
537 "epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021":"background",
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iuc
parents:
diff changeset
538 "epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
539 "epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
540 "epi_isl_1543980_hCoV_19_Singapore_490_2021":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
541 "epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021":"background",
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iuc
parents:
diff changeset
542 "epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
543 "epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021":"background",
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iuc
parents:
diff changeset
544 "epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021":"background",
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iuc
parents:
diff changeset
545 "epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021":"background",
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iuc
parents:
diff changeset
546 "epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021":"background",
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iuc
parents:
diff changeset
547 "epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021":"background",
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iuc
parents:
diff changeset
548 "epi_isl_1652105_hCoV_19_Singapore_561_2021":"background",
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iuc
parents:
diff changeset
549 "epi_isl_1652118_hCoV_19_Singapore_575_2021":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
550 "gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human":"background",
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iuc
parents:
diff changeset
551 "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human":"background",
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iuc
parents:
diff changeset
552 "gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
553 "gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
554 "gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human":"background",
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iuc
parents:
diff changeset
555 "gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
556 "gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human":"background",
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iuc
parents:
diff changeset
557 "gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
558 "gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
559 "gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human":"background",
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iuc
parents:
diff changeset
560 "gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human":"background",
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iuc
parents:
diff changeset
561 "gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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562 "gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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563 "gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human":"background",
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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564 "gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human":"background"
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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565 }
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
566 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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567 "timers":{
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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568 "FEL analysis":{
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
569 "order":2,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
diff changeset
570 "timer":4
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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571 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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572 "Model fitting":{
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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573 "order":1,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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574 "timer":6
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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575 },
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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576 "Total time":{
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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577 "order":0,
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
parents:
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578 "timer":10
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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579 }
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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580 }
8741542f9bc8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
iuc
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581 }